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The map label for this gene is yiaD [H]

Identifier: 114800290

GI number: 114800290

Start: 3481862

End: 3482497

Strand: Reverse

Name: yiaD [H]

Synonym: HNE_3330

Alternate gene names: 114800290

Gene position: 3482497-3481862 (Counterclockwise)

Preceding gene: 114800151

Following gene: 114798215

Centisome position: 93.99

GC content: 63.99

Gene sequence:

>636_bases
ATGAAGACATCAGTTCTAATCGCGGCCGCACTCATGCTGCCACTCGTTCAGGCTTGCGAAACTGGCCCCAGCCAGCGCGT
TCTGACCACCGGCGCCGCCGGTGCAATCCTTGGCGCAGGCGCCGGCATGATGGCCGGCGGTGACGACAAGCGGAACGCGG
CCATCGGCGCCGCGGTTGGCGCGGTCGCAGGCGCCTCGGTCGGCGTTTACATGGACCGTCAGGAAGAAAAACTGCGCCAG
CAGACCGCTGGCACAGGTATCGAAGTTGAGCGTCAGGGCGACCAGATCGCGCTGACCATGCCGTCGGGCATCTCCTTCCA
GCAGGGCAGCGCCCAGATTCAGCCAGCCTTTTACCAGACGCTGAACGATGTCGCCGCAACGCTGAACGAGTATCCTTCGA
CTGCCGTTGACATCCGCGGCCACGCCTCTTCGGAAGGCGCCCGTGATTTCAACCAGCGCCTGTCGCAACAGCGCGCAGAC
GCTGTGCGCAGCTACCTGACCAATCAGGGCGTTCAGGGCGTGCGCATGTCGGCTGTCGGCATGGGCATCGACTATCCGGT
TGCGGACAACTCGACCGAAGCAGGCCGTTCGCAGAACCGCCGCGTCGAGATCATCCTGACGCCGGTTACGCAGTAA

Upstream 100 bases:

>100_bases
TTTTAGGGGGGATATCAAAAAATCCCCGCTCAGTTGGCTCCCATTCAGATTGGTCATGTCACAGGCGGCACCATAACTTC
ATCCAAAGGGAGTCATTCTC

Downstream 100 bases:

>100_bases
TCACGACAGGCTCAGGAAACTGGGCAAGACGGCGGCGGTCACCTCGAGGTGGCCGCCGCCTTTCGTTTGCGCTTCAGCGG
CAGGCCTCTTCGGCCTTTGC

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKTSVLIAAALMLPLVQACETGPSQRVLTTGAAGAILGAGAGMMAGGDDKRNAAIGAAVGAVAGASVGVYMDRQEEKLRQ
QTAGTGIEVERQGDQIALTMPSGISFQQGSAQIQPAFYQTLNDVAATLNEYPSTAVDIRGHASSEGARDFNQRLSQQRAD
AVRSYLTNQGVQGVRMSAVGMGIDYPVADNSTEAGRSQNRRVEIILTPVTQ

Sequences:

>Translated_211_residues
MKTSVLIAAALMLPLVQACETGPSQRVLTTGAAGAILGAGAGMMAGGDDKRNAAIGAAVGAVAGASVGVYMDRQEEKLRQ
QTAGTGIEVERQGDQIALTMPSGISFQQGSAQIQPAFYQTLNDVAATLNEYPSTAVDIRGHASSEGARDFNQRLSQQRAD
AVRSYLTNQGVQGVRMSAVGMGIDYPVADNSTEAGRSQNRRVEIILTPVTQ
>Mature_211_residues
MKTSVLIAAALMLPLVQACETGPSQRVLTTGAAGAILGAGAGMMAGGDDKRNAAIGAAVGAVAGASVGVYMDRQEEKLRQ
QTAGTGIEVERQGDQIALTMPSGISFQQGSAQIQPAFYQTLNDVAATLNEYPSTAVDIRGHASSEGARDFNQRLSQQRAD
AVRSYLTNQGVQGVRMSAVGMGIDYPVADNSTEAGRSQNRRVEIILTPVTQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=219, Percent_Identity=47.945205479452, Blast_Score=149, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21971; Mature: 21971

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSVLIAAALMLPLVQACETGPSQRVLTTGAAGAILGAGAGMMAGGDDKRNAAIGAAVG
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHH
AVAGASVGVYMDRQEEKLRQQTAGTGIEVERQGDQIALTMPSGISFQQGSAQIQPAFYQT
HHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHH
LNDVAATLNEYPSTAVDIRGHASSEGARDFNQRLSQQRADAVRSYLTNQGVQGVRMSAVG
HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
MGIDYPVADNSTEAGRSQNRRVEIILTPVTQ
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKTSVLIAAALMLPLVQACETGPSQRVLTTGAAGAILGAGAGMMAGGDDKRNAAIGAAVG
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHH
AVAGASVGVYMDRQEEKLRQQTAGTGIEVERQGDQIALTMPSGISFQQGSAQIQPAFYQT
HHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHH
LNDVAATLNEYPSTAVDIRGHASSEGARDFNQRLSQQRADAVRSYLTNQGVQGVRMSAVG
HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
MGIDYPVADNSTEAGRSQNRRVEIILTPVTQ
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]