| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is cirA [H]
Identifier: 114799790
GI number: 114799790
Start: 146696
End: 149584
Strand: Direct
Name: cirA [H]
Synonym: HNE_0164
Alternate gene names: 114799790
Gene position: 146696-149584 (Clockwise)
Preceding gene: 114799876
Following gene: 114798252
Centisome position: 3.96
GC content: 57.6
Gene sequence:
>2889_bases ATGAAGTATTTCAAGGAAGTGCTCCTTTGCGCCTCAGCGATTGCGCTGAGCGGCGTACTGGGAGCACATGCACAACAAGA AGATGGTGAGCGTAAGCTCAGCACCGTGACAGTCACAGGGTCTTACATTCAGGGTAGTCCGGAGGATGCTGCCCTGCCTG TCGACGTGCTCACCGCAGCCGACCTTGTCCTCGAGGGCAAGCCATCGGTAACCGAACTGATCCGGAATCTGGGCGTTTCG TCCGGTGTAGATGGTCAGACGAACCAGTTTGCCTCAAACGGCCTGGAAGGCACGTCCAACGTGAACCTTCGCGGTCTGGG GCCCGCGCGGACGCTCGTACTCATAAACGGGCGGCGCCATACATTCCATCCATATTCCATCGGCGAGCAGGCGCAGCTGT TTGTCGACACCAACAGCATTCCTTCAATTGCGGTGGGCCGTATTGAAGTTCTCAAAGATGGCGCCGCGGCGCTCTACGGC TCCGATGCAATTGCCGGCGTCGTCAACTTCATCACCCGCGATGACCTGGAAGGGTTTGAAATCGGCGGGTCATATCAAAC CTTCGAAGGCACAGACGGCGAGTATGACGTCTCCGCCGCCTATGGCTTCCAGGGATCAAACTTCAACTGGGTTACGTCCG TCGGCTACCAGTTCCGCAACGAAGTGCGCGCGAACGAAAAGGAGTGGGGCGTTCAGCCTTACGCCAACAACCCGGTCGGG GGATGGTCGGCTATCTCCAATCCGGGACGCTTTGTTCCGCTTGGTATCGGTGCAAATGGCCTGACGCCACTGGCGGCAAA CGTGAATGATGTCGGGTGCGAACCGCTGGGTGGCACGCTGGCGCCAACCTGCGTGTTCAACTTCACCCAGTTCGACAACC TGGTCGAAGAGGAGGAGCGGTTCCAATTCCTGACGGAATATAACCGGCAACTCGGCAACGGCGCGGAACTGCACCTTGAG CTGATGTATGCGCAGACGGATGTTCCGACCTGGAAAACATCGCCCTCTTACCCGCCGCAAGTTCTGACCAACCAGGTATT GCTCGCCAGCCATCCAGGCTTCCAGCAGTATATTGCGGACAATCCGGGTGCGTTTCCGACTGGTACGGTCGCCGCCTTGT TCATTGGCCGGTCTTTCGGTCTTGGCGGCTATCCGGGGACCGGAAGCTCTCAGGAAGGTAGCCGGGATTATAATACCTGG CGTGGCTCCGGCTCGTACACAGGCAGCTTCGAGAACGACATCAATTATGATCTCGGGCTTTCCTACTCAACGACTGAAGG CTATCGCCTGACAAACGACACCTACATCACGGGCCTGACATCAGCGCTGCGCGGTTTTGGTGTGTGTACAGATCCCAATA CGGGGTTTGACCCGGCAACAGGCACTGTGCCCTACGCGCCCGGCTATGCCGGAACGCTGACGGCCGGGGCTGGCGGCTGC GAATACTACAATCCGTTCTCGAACGGTATTGCCGCCAATGCTGTGACCGGGGCGGAAAACCCAGGCTATGTGCCGGGGCT GGAAAACTCGGTAGCGCTTGCTGACTGGTTGACCGATCCAAGCGAGACGACAGCAACGACGGACCTTCTGGTGTTTGATG CCGTATTCTCAGGCACCAGCAACGTCCAGGCTGCCGGCGGCGCAATCGGTTGGGCCGCAGGCGCTCAGGTTCGCCGGGAA AGCTTTGAGGTCGAGCCATCTGCTTTGACCGATCTCAGTGTTACCCCAGGACCAGGCGGCACAGGCCCGTACTCCTTCCT CGCAGGCACAAATGCGGCCGACAGGGAGCAGACGATCTATGCTGTCTTCGGCGAACTGCAGGTTCCGCTTTACGACAATC TGGATATGCAGGTTGCCGTCCGGTATGAGGACTATGGCGGGTCTATCGGCTCGACATTTGACCCCAAGGTTGCGGCCAAA TGGCAGGTGAATGACAATATCGCCCTGCGCGGTTCTGCTCAGACATCCTTCCGTGGACCGACGCTCAACCAGCTTGATGG TGTTGGCACAACTCTGCAGTTTGTGTCTGCGGCTTCAGCCTTCAAGGCGATCGACCAGTTCGGTAACCCTGACCTTGCTC CGGAATCGGCATTCAGCTTCAACTTCGGTGCCCTCTTCGAGCAAGGCGGATTCAATGCCTCGCTGGATTACTACAATTTC GACTTTGAAGACCCGATCATCGTGGAAGAACAGTCGAACATTGTGGCGGCAGCTGTCACGGCTCTGAGAGCCGGCGACCT CTCTGATCCGATCCTCAGCCGGATCACGTTCAACGATCCCAACAACATCATTACCGGGACAGGCACACCTGCGGCCGGTT CTGATATTGCACGTGTCCGGACGGGTGTCGTGAACGGCCCGAACATCAAGACTTCGGGTATCGACCTGCGCCTCGGCAAT ACCTTTGGCGCGATGCAGGGGGGCGGGGAGATTTCTCTCGGACTCGATGCGACCTACATCATCGAATATGATGTGGCGCC TTACTTTGTTGAAGGCGTCTCGATCGGCGGCGGTGATTATGTTGGCCAGTTCAACCGGTCCAACTTCACCCGGTCGATGC CACAATGGAAGGCAAACGTGTTTGCCAATTATGCGCTTGGCGATCACAACCTCCGGGCTGTGATGCGTCACATCGACAGC TACAAGGATGAACGTGCACCAGCCGCGCGCGGCGGCGTTGGCGAAAAGATCGACGCTCAGACGACGTTCGATCTTTTCTA CAACTGGAAGGCACCGTTTGAATTCGATCTGGGTCTAAGCGTTGTCAACGTGACGGATGAAGATCCGCCATTTGCGGCAT TCGATCTGAACTATGATCCCTATACCCACAATCCGTTCGGCCGGACCTTCAAAATCAACCTGACCAAACGCTTCGGCGGC GGTAGCTGA
Upstream 100 bases:
>100_bases CCCTTTGCGACCTCGCAATACCGCATAAGAGTGAGATGTGTCCAATCAATGACAAGCGGCAAAAGCTTGCGCCTGGACCA GTTTAAACGGGAGGAAGCGA
Downstream 100 bases:
>100_bases TAAAGAGGTAGGCTCGAACAGAGTTCCTTAGAGGCGGCCCCCGGAAACGGGGGCCGTTTTTCTTGAGCCGGAAAGAAAAA GGGCGGCCTGGAGGCCGCCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 962; Mature: 962
Protein sequence:
>962_residues MKYFKEVLLCASAIALSGVLGAHAQQEDGERKLSTVTVTGSYIQGSPEDAALPVDVLTAADLVLEGKPSVTELIRNLGVS SGVDGQTNQFASNGLEGTSNVNLRGLGPARTLVLINGRRHTFHPYSIGEQAQLFVDTNSIPSIAVGRIEVLKDGAAALYG SDAIAGVVNFITRDDLEGFEIGGSYQTFEGTDGEYDVSAAYGFQGSNFNWVTSVGYQFRNEVRANEKEWGVQPYANNPVG GWSAISNPGRFVPLGIGANGLTPLAANVNDVGCEPLGGTLAPTCVFNFTQFDNLVEEEERFQFLTEYNRQLGNGAELHLE LMYAQTDVPTWKTSPSYPPQVLTNQVLLASHPGFQQYIADNPGAFPTGTVAALFIGRSFGLGGYPGTGSSQEGSRDYNTW RGSGSYTGSFENDINYDLGLSYSTTEGYRLTNDTYITGLTSALRGFGVCTDPNTGFDPATGTVPYAPGYAGTLTAGAGGC EYYNPFSNGIAANAVTGAENPGYVPGLENSVALADWLTDPSETTATTDLLVFDAVFSGTSNVQAAGGAIGWAAGAQVRRE SFEVEPSALTDLSVTPGPGGTGPYSFLAGTNAADREQTIYAVFGELQVPLYDNLDMQVAVRYEDYGGSIGSTFDPKVAAK WQVNDNIALRGSAQTSFRGPTLNQLDGVGTTLQFVSAASAFKAIDQFGNPDLAPESAFSFNFGALFEQGGFNASLDYYNF DFEDPIIVEEQSNIVAAAVTALRAGDLSDPILSRITFNDPNNIITGTGTPAAGSDIARVRTGVVNGPNIKTSGIDLRLGN TFGAMQGGGEISLGLDATYIIEYDVAPYFVEGVSIGGGDYVGQFNRSNFTRSMPQWKANVFANYALGDHNLRAVMRHIDS YKDERAPAARGGVGEKIDAQTTFDLFYNWKAPFEFDLGLSVVNVTDEDPPFAAFDLNYDPYTHNPFGRTFKINLTKRFGG GS
Sequences:
>Translated_962_residues MKYFKEVLLCASAIALSGVLGAHAQQEDGERKLSTVTVTGSYIQGSPEDAALPVDVLTAADLVLEGKPSVTELIRNLGVS SGVDGQTNQFASNGLEGTSNVNLRGLGPARTLVLINGRRHTFHPYSIGEQAQLFVDTNSIPSIAVGRIEVLKDGAAALYG SDAIAGVVNFITRDDLEGFEIGGSYQTFEGTDGEYDVSAAYGFQGSNFNWVTSVGYQFRNEVRANEKEWGVQPYANNPVG GWSAISNPGRFVPLGIGANGLTPLAANVNDVGCEPLGGTLAPTCVFNFTQFDNLVEEEERFQFLTEYNRQLGNGAELHLE LMYAQTDVPTWKTSPSYPPQVLTNQVLLASHPGFQQYIADNPGAFPTGTVAALFIGRSFGLGGYPGTGSSQEGSRDYNTW RGSGSYTGSFENDINYDLGLSYSTTEGYRLTNDTYITGLTSALRGFGVCTDPNTGFDPATGTVPYAPGYAGTLTAGAGGC EYYNPFSNGIAANAVTGAENPGYVPGLENSVALADWLTDPSETTATTDLLVFDAVFSGTSNVQAAGGAIGWAAGAQVRRE SFEVEPSALTDLSVTPGPGGTGPYSFLAGTNAADREQTIYAVFGELQVPLYDNLDMQVAVRYEDYGGSIGSTFDPKVAAK WQVNDNIALRGSAQTSFRGPTLNQLDGVGTTLQFVSAASAFKAIDQFGNPDLAPESAFSFNFGALFEQGGFNASLDYYNF DFEDPIIVEEQSNIVAAAVTALRAGDLSDPILSRITFNDPNNIITGTGTPAAGSDIARVRTGVVNGPNIKTSGIDLRLGN TFGAMQGGGEISLGLDATYIIEYDVAPYFVEGVSIGGGDYVGQFNRSNFTRSMPQWKANVFANYALGDHNLRAVMRHIDS YKDERAPAARGGVGEKIDAQTTFDLFYNWKAPFEFDLGLSVVNVTDEDPPFAAFDLNYDPYTHNPFGRTFKINLTKRFGG GS >Mature_962_residues MKYFKEVLLCASAIALSGVLGAHAQQEDGERKLSTVTVTGSYIQGSPEDAALPVDVLTAADLVLEGKPSVTELIRNLGVS SGVDGQTNQFASNGLEGTSNVNLRGLGPARTLVLINGRRHTFHPYSIGEQAQLFVDTNSIPSIAVGRIEVLKDGAAALYG SDAIAGVVNFITRDDLEGFEIGGSYQTFEGTDGEYDVSAAYGFQGSNFNWVTSVGYQFRNEVRANEKEWGVQPYANNPVG GWSAISNPGRFVPLGIGANGLTPLAANVNDVGCEPLGGTLAPTCVFNFTQFDNLVEEEERFQFLTEYNRQLGNGAELHLE LMYAQTDVPTWKTSPSYPPQVLTNQVLLASHPGFQQYIADNPGAFPTGTVAALFIGRSFGLGGYPGTGSSQEGSRDYNTW RGSGSYTGSFENDINYDLGLSYSTTEGYRLTNDTYITGLTSALRGFGVCTDPNTGFDPATGTVPYAPGYAGTLTAGAGGC EYYNPFSNGIAANAVTGAENPGYVPGLENSVALADWLTDPSETTATTDLLVFDAVFSGTSNVQAAGGAIGWAAGAQVRRE SFEVEPSALTDLSVTPGPGGTGPYSFLAGTNAADREQTIYAVFGELQVPLYDNLDMQVAVRYEDYGGSIGSTFDPKVAAK WQVNDNIALRGSAQTSFRGPTLNQLDGVGTTLQFVSAASAFKAIDQFGNPDLAPESAFSFNFGALFEQGGFNASLDYYNF DFEDPIIVEEQSNIVAAAVTALRAGDLSDPILSRITFNDPNNIITGTGTPAAGSDIARVRTGVVNGPNIKTSGIDLRLGN TFGAMQGGGEISLGLDATYIIEYDVAPYFVEGVSIGGGDYVGQFNRSNFTRSMPQWKANVFANYALGDHNLRAVMRHIDS YKDERAPAARGGVGEKIDAQTTFDLFYNWKAPFEFDLGLSVVNVTDEDPPFAAFDLNYDPYTHNPFGRTFKINLTKRFGG GS
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=174, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102349; Mature: 102349
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYFKEVLLCASAIALSGVLGAHAQQEDGERKLSTVTVTGSYIQGSPEDAALPVDVLTAA CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEECCCCCCCCCCHHHHHHH DLVLEGKPSVTELIRNLGVSSGVDGQTNQFASNGLEGTSNVNLRGLGPARTLVLINGRRH HEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCC TFHPYSIGEQAQLFVDTNSIPSIAVGRIEVLKDGAAALYGSDAIAGVVNFITRDDLEGFE EECCCCCCCCEEEEEECCCCCCEEECEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCEE IGGSYQTFEGTDGEYDVSAAYGFQGSNFNWVTSVGYQFRNEVRANEKEWGVQPYANNPVG ECCCEEECCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCCCCCC GWSAISNPGRFVPLGIGANGLTPLAANVNDVGCEPLGGTLAPTCVFNFTQFDNLVEEEER CCHHCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHH FQFLTEYNRQLGNGAELHLELMYAQTDVPTWKTSPSYPPQVLTNQVLLASHPGFQQYIAD HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHCCEEEECCCCHHHHHCC NPGAFPTGTVAALFIGRSFGLGGYPGTGSSQEGSRDYNTWRGSGSYTGSFENDINYDLGL CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC SYSTTEGYRLTNDTYITGLTSALRGFGVCTDPNTGFDPATGTVPYAPGYAGTLTAGAGGC EEECCCCEEECCCCEEHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC EYYNPFSNGIAANAVTGAENPGYVPGLENSVALADWLTDPSETTATTDLLVFDAVFSGTS CCCCCCCCCCEECEECCCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHHEEEEHHHHCCCC NVQAAGGAIGWAAGAQVRRESFEVEPSALTDLSVTPGPGGTGPYSFLAGTNAADREQTIY CCEECCCCEEHHHCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEE AVFGELQVPLYDNLDMQVAVRYEDYGGSIGSTFDPKVAAKWQVNDNIALRGSAQTSFRGP EEEEEEEECEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCC TLNQLDGVGTTLQFVSAASAFKAIDQFGNPDLAPESAFSFNFGALFEQGGFNASLDYYNF CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEC DFEDPIIVEEQSNIVAAAVTALRAGDLSDPILSRITFNDPNNIITGTGTPAAGSDIARVR CCCCCEEEECCCCEEEHHHHHHHCCCCCCCHHHEEEECCCCCEEECCCCCCCCCCHHHHH TGVVNGPNIKTSGIDLRLGNTFGAMQGGGEISLGLDATYIIEYDVAPYFVEGVSIGGGDY HCCCCCCCEEECCEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEECCCCE VGQFNRSNFTRSMPQWKANVFANYALGDHNLRAVMRHIDSYKDERAPAARGGVGEKIDAQ EECCCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC TTFDLFYNWKAPFEFDLGLSVVNVTDEDPPFAAFDLNYDPYTHNPFGRTFKINLTKRFGG EEEEEEEECCCCEEEECCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCC GS CC >Mature Secondary Structure MKYFKEVLLCASAIALSGVLGAHAQQEDGERKLSTVTVTGSYIQGSPEDAALPVDVLTAA CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEECCCCCCCCCCHHHHHHH DLVLEGKPSVTELIRNLGVSSGVDGQTNQFASNGLEGTSNVNLRGLGPARTLVLINGRRH HEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCC TFHPYSIGEQAQLFVDTNSIPSIAVGRIEVLKDGAAALYGSDAIAGVVNFITRDDLEGFE EECCCCCCCCEEEEEECCCCCCEEECEEEEECCCCCEEECCHHHHHHHHHHHHCCCCCEE IGGSYQTFEGTDGEYDVSAAYGFQGSNFNWVTSVGYQFRNEVRANEKEWGVQPYANNPVG ECCCEEECCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHCCCCHHCCCCCCCCCCCC GWSAISNPGRFVPLGIGANGLTPLAANVNDVGCEPLGGTLAPTCVFNFTQFDNLVEEEER CCHHCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHH FQFLTEYNRQLGNGAELHLELMYAQTDVPTWKTSPSYPPQVLTNQVLLASHPGFQQYIAD HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHCCEEEECCCCHHHHHCC NPGAFPTGTVAALFIGRSFGLGGYPGTGSSQEGSRDYNTWRGSGSYTGSFENDINYDLGL CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC SYSTTEGYRLTNDTYITGLTSALRGFGVCTDPNTGFDPATGTVPYAPGYAGTLTAGAGGC EEECCCCEEECCCCEEHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC EYYNPFSNGIAANAVTGAENPGYVPGLENSVALADWLTDPSETTATTDLLVFDAVFSGTS CCCCCCCCCCEECEECCCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHHEEEEHHHHCCCC NVQAAGGAIGWAAGAQVRRESFEVEPSALTDLSVTPGPGGTGPYSFLAGTNAADREQTIY CCEECCCCEEHHHCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCCCEEE AVFGELQVPLYDNLDMQVAVRYEDYGGSIGSTFDPKVAAKWQVNDNIALRGSAQTSFRGP EEEEEEEECEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCC TLNQLDGVGTTLQFVSAASAFKAIDQFGNPDLAPESAFSFNFGALFEQGGFNASLDYYNF CHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEC DFEDPIIVEEQSNIVAAAVTALRAGDLSDPILSRITFNDPNNIITGTGTPAAGSDIARVR CCCCCEEEECCCCEEEHHHHHHHCCCCCCCHHHEEEECCCCCEEECCCCCCCCCCHHHHH TGVVNGPNIKTSGIDLRLGNTFGAMQGGGEISLGLDATYIIEYDVAPYFVEGVSIGGGDY HCCCCCCCEEECCEEEEECCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEECCCCE VGQFNRSNFTRSMPQWKANVFANYALGDHNLRAVMRHIDSYKDERAPAARGGVGEKIDAQ EECCCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC TTFDLFYNWKAPFEFDLGLSVVNVTDEDPPFAAFDLNYDPYTHNPFGRTFKINLTKRFGG EEEEEEEECCCCEEEECCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCC GS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]