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The map label for this gene is yebC [C]

Identifier: 114799876

GI number: 114799876

Start: 143079

End: 143837

Strand: Direct

Name: yebC [C]

Synonym: HNE_0161

Alternate gene names: 114799876

Gene position: 143079-143837 (Clockwise)

Preceding gene: 114797110

Following gene: 114799790

Centisome position: 3.86

GC content: 59.82

Gene sequence:

>759_bases
ATGGCCGGACACAGCAAATGGGCCAACATCCAGCACCGCAAAGGCAAGCAGGACAAGAAGCGCGCCGTTCTTTTCGCGCG
CCTGTCCAAGGAGATCACGGTCGCCTCGAAGATGGGCGGCCCGGACCCTGCGATGAACCCGCGCCTGCGTCTTGCGATTA
CCAACGCGAAGGGCGTCTCTGTTCCCAAGGACAACATCCAGCGCGCCATTGATAAAGGGCAGAGCAGCGGCGGGGCCGAC
TATGCTGACATCCGGTATGAAGGCGTGGGGCCGGGCGGCGTGGGTATCATCGTTGAAGCCTCCACCGACAACAAGAACCG
CGCGGCGACAGACATCCGGACAGCCTTTTCAAAAAATGGCGGCACATTGGGAACCACCGGGTCGGTATCTTTCAATTTCG
ATCAGCTCGGCGAGATCGAGTATCCGGTGAGCGCGGGATCGGCAGACGAAGTCATGGAAGCGGCCATCATGGCGGGCGCG
CAGGACGTGGAGTCGAATGAGGACGGCCACTGGATCTATACGGCGCGGGAAGACTTCGCGGCCGTATCCACTGCGCTGGC
GGACACGTTCGGGAGTAAGGTTGAGCCGACTTCAGCAAAAATCATCTGGAAACCGAAGGTGACCACGCCGATTGCAGGCG
ACGCAGCCGACCAGTTGATGAAGATGCTCGATGTGCTCGATGAGCTCGACGATGTTCAGAGTGTCTACGACAATTCGGAA
ATCTCTGAAGACGAGATGGCCCGCCTTTCCGGGGGCTGA

Upstream 100 bases:

>100_bases
GCGCTAACATGGATCGCATCGGCCCGGCTTCCCAAGGGCGCCCTCGCGCGATAGACACCCGCCACAACTGCGTAACCAGA
GATTATCAAGGGGATTTCCC

Downstream 100 bases:

>100_bases
TTACCCCTCTGCGCCAAGGCCGAGGCTCTCCAGGATACTTTCCGTATCAGCGCCTGGCCGCGGGGGCGGCAGGCGCAAGC
TGGCGGGCGTTTCGGAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MAGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKMGGPDPAMNPRLRLAITNAKGVSVPKDNIQRAIDKGQSSGGAD
YADIRYEGVGPGGVGIIVEASTDNKNRAATDIRTAFSKNGGTLGTTGSVSFNFDQLGEIEYPVSAGSADEVMEAAIMAGA
QDVESNEDGHWIYTAREDFAAVSTALADTFGSKVEPTSAKIIWKPKVTTPIAGDAADQLMKMLDVLDELDDVQSVYDNSE
ISEDEMARLSGG

Sequences:

>Translated_252_residues
MAGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKMGGPDPAMNPRLRLAITNAKGVSVPKDNIQRAIDKGQSSGGAD
YADIRYEGVGPGGVGIIVEASTDNKNRAATDIRTAFSKNGGTLGTTGSVSFNFDQLGEIEYPVSAGSADEVMEAAIMAGA
QDVESNEDGHWIYTAREDFAAVSTALADTFGSKVEPTSAKIIWKPKVTTPIAGDAADQLMKMLDVLDELDDVQSVYDNSE
ISEDEMARLSGG
>Mature_251_residues
AGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKMGGPDPAMNPRLRLAITNAKGVSVPKDNIQRAIDKGQSSGGADY
ADIRYEGVGPGGVGIIVEASTDNKNRAATDIRTAFSKNGGTLGTTGSVSFNFDQLGEIEYPVSAGSADEVMEAAIMAGAQ
DVESNEDGHWIYTAREDFAAVSTALADTFGSKVEPTSAKIIWKPKVTTPIAGDAADQLMKMLDVLDELDDVQSVYDNSEI
SEDEMARLSGG

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=252, Percent_Identity=30.1587301587302, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1788171, Length=253, Percent_Identity=43.4782608695652, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=35.3191489361702, Blast_Score=131, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI17556100, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=32.9545454545455, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24583305, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y161_HYPNA (Q0C5U8)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758895.1
- ProteinModelPortal:   Q0C5U8
- SMR:   Q0C5U8
- STRING:   Q0C5U8
- GeneID:   4287459
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0161
- NMPDR:   fig|228405.5.peg.158
- TIGR:   HNE_0161
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- BioCyc:   HNEP81032:HNE_0161-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26783; Mature: 26652

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKMGGPDPAMNPRLRLAITNAKGVS
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCEEEEEEECCCCCC
VPKDNIQRAIDKGQSSGGADYADIRYEGVGPGGVGIIVEASTDNKNRAATDIRTAFSKNG
CCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
GTLGTTGSVSFNFDQLGEIEYPVSAGSADEVMEAAIMAGAQDVESNEDGHWIYTAREDFA
CCCCCCCCEEECHHHCCCEECCCCCCCHHHHHHHHHHHCCHHCCCCCCCCEEEECCHHHH
AVSTALADTFGSKVEPTSAKIIWKPKVTTPIAGDAADQLMKMLDVLDELDDVQSVYDNSE
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISEDEMARLSGG
CCHHHHHHHCCC
>Mature Secondary Structure 
AGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKMGGPDPAMNPRLRLAITNAKGVS
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHEEHHHCCCCCCCCCCEEEEEEECCCCCC
VPKDNIQRAIDKGQSSGGADYADIRYEGVGPGGVGIIVEASTDNKNRAATDIRTAFSKNG
CCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
GTLGTTGSVSFNFDQLGEIEYPVSAGSADEVMEAAIMAGAQDVESNEDGHWIYTAREDFA
CCCCCCCCEEECHHHCCCEECCCCCCCHHHHHHHHHHHCCHHCCCCCCCCEEEECCHHHH
AVSTALADTFGSKVEPTSAKIIWKPKVTTPIAGDAADQLMKMLDVLDELDDVQSVYDNSE
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
ISEDEMARLSGG
CCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA