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The map label for this gene is ycaD [H]

Identifier: 114798591

GI number: 114798591

Start: 302686

End: 303930

Strand: Direct

Name: ycaD [H]

Synonym: HNE_0309

Alternate gene names: 114798591

Gene position: 302686-303930 (Clockwise)

Preceding gene: 114797837

Following gene: 114799396

Centisome position: 8.17

GC content: 66.51

Gene sequence:

>1245_bases
ATGACTGACACACGCTCTGTTCTTGCGCTGATCCTGTCGGTCATGATCCTGCAGCTGGCAGGCGGGCTGACCGGCATCCT
GACGCCGCTTGGTCTTGAGCGTCTCGGCGTCGATGCCTCCCTGATCGGCTTTGTCGCCGCCATGAACGCGGCCGGCTTCA
TGCTGGGCGCGTGGACCTCGCCGCGCGCGCTCGCGCTCGTCGGCAATATCCGCCTCTTTGCGGCCGGGGCCGGGGTCAGC
GCCGCAGGCATCCTCTCCCTGTCGCTGATCCAGGAAGCGCCGTTCTGGGCGCTGATTCGCGTTTTGCAGGGCATCAGCTT
TGCCTACATGTTCACCAGTATCGAAAGCTGGCTGGGCGAGGCGGTGCCCGCCCGGTCTCGCGGCAATGTGATGGGGGTCT
ACCATACCGCTGCCAAGCTCTCGCTGATCGTCGGGCCGTTCTTTCTGGCCGGGCTCTCCCCGCTCGACAGCCGCTCCTAT
GTCTGGGCCGGCGTCTTCCTCGCCCTCGCGCTGGTGCCCACCTGCCTCACCACCCTGAAAGAACCTCCACCGCCAGACCG
CAAATCCATGCCGCTCAGCCAGCTGTTCACGCTGGCACCCGCCGCCGTGATCGGTGTGGTCGGGGCAGGGCTCGTGAACA
CCGGCACGCTGGCGCTTCTGCCGGTCTATTTCGAGAAATTCGAGCTGGCGGGCGGGGGCACAGCGGCCGCCGCCATTGCC
ATCGCCATTGCCTGGATCGGCGGGCTGATCGTGCAATGGCCAGCGGGCCGGATTTCTGATGCGATTGATCGCCGCCTGGT
AATCGCCGGGCTGACGGCGGTATCGGGCGCCGCCGCCATCCTGATCGCCGTGTTCGGCAGCGTGATCGGAGAGGCCGGCG
TTCTTGTGCTGATCGGAATCTGGGGAGCAGGGGCACTCTGTTTTTATGGCGTTTGCGTTTCCCACGCGATCGACCGCACC
CCGCCGGGCCAGGTGCCGCAGGTGATGTCCGGGCTGTTATTTGTCTGGGCCGCTGGCTCGATCATAGGGCCCCTCATTTC
CGGCGTTGCCATGCGGATGGCGGGCGCCGTGGGCCTCTTCGGCTTTGCGGGCGTGATGTTGGGGCTGCTCACGGTCTACA
TGATCGTGCGGGTTCGCCAGCGCGCCGCGGCGGAGTCTCCCCCCTCGGGCGAGCGCGGATCGATCCTCCCCAGCCCGCTG
GCGAGTGTCGAAATCATGCCGCGTGACCCCACGGAAGGCGAGTAA

Upstream 100 bases:

>100_bases
CGACACCGGCGACACCGTGAGTGAAGTGGCAGTGCCGTTCCGGGGCTCTGCCGCGCAGTAATTCAGGCAGGGCGCATGAG
ACGCCCGCCAAGGCGAGGCG

Downstream 100 bases:

>100_bases
AGCTAAGTATCCAACCTTGTACTCAGCCTGTTGCAGCATACCTTCAGGCGTGTATATAGCGGCCCCGTCAACGAGGAACG
GAAACGGCACCGGCACCGGC

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTDTRSVLALILSVMILQLAGGLTGILTPLGLERLGVDASLIGFVAAMNAAGFMLGAWTSPRALALVGNIRLFAAGAGVS
AAGILSLSLIQEAPFWALIRVLQGISFAYMFTSIESWLGEAVPARSRGNVMGVYHTAAKLSLIVGPFFLAGLSPLDSRSY
VWAGVFLALALVPTCLTTLKEPPPPDRKSMPLSQLFTLAPAAVIGVVGAGLVNTGTLALLPVYFEKFELAGGGTAAAAIA
IAIAWIGGLIVQWPAGRISDAIDRRLVIAGLTAVSGAAAILIAVFGSVIGEAGVLVLIGIWGAGALCFYGVCVSHAIDRT
PPGQVPQVMSGLLFVWAAGSIIGPLISGVAMRMAGAVGLFGFAGVMLGLLTVYMIVRVRQRAAAESPPSGERGSILPSPL
ASVEIMPRDPTEGE

Sequences:

>Translated_414_residues
MTDTRSVLALILSVMILQLAGGLTGILTPLGLERLGVDASLIGFVAAMNAAGFMLGAWTSPRALALVGNIRLFAAGAGVS
AAGILSLSLIQEAPFWALIRVLQGISFAYMFTSIESWLGEAVPARSRGNVMGVYHTAAKLSLIVGPFFLAGLSPLDSRSY
VWAGVFLALALVPTCLTTLKEPPPPDRKSMPLSQLFTLAPAAVIGVVGAGLVNTGTLALLPVYFEKFELAGGGTAAAAIA
IAIAWIGGLIVQWPAGRISDAIDRRLVIAGLTAVSGAAAILIAVFGSVIGEAGVLVLIGIWGAGALCFYGVCVSHAIDRT
PPGQVPQVMSGLLFVWAAGSIIGPLISGVAMRMAGAVGLFGFAGVMLGLLTVYMIVRVRQRAAAESPPSGERGSILPSPL
ASVEIMPRDPTEGE
>Mature_413_residues
TDTRSVLALILSVMILQLAGGLTGILTPLGLERLGVDASLIGFVAAMNAAGFMLGAWTSPRALALVGNIRLFAAGAGVSA
AGILSLSLIQEAPFWALIRVLQGISFAYMFTSIESWLGEAVPARSRGNVMGVYHTAAKLSLIVGPFFLAGLSPLDSRSYV
WAGVFLALALVPTCLTTLKEPPPPDRKSMPLSQLFTLAPAAVIGVVGAGLVNTGTLALLPVYFEKFELAGGGTAAAAIAI
AIAWIGGLIVQWPAGRISDAIDRRLVIAGLTAVSGAAAILIAVFGSVIGEAGVLVLIGIWGAGALCFYGVCVSHAIDRTP
PGQVPQVMSGLLFVWAAGSIIGPLISGVAMRMAGAVGLFGFAGVMLGLLTVYMIVRVRQRAAAESPPSGERGSILPSPLA
SVEIMPRDPTEGE

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=330, Percent_Identity=21.5151515151515, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42470; Mature: 42339

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTRSVLALILSVMILQLAGGLTGILTPLGLERLGVDASLIGFVAAMNAAGFMLGAWTS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCC
PRALALVGNIRLFAAGAGVSAAGILSLSLIQEAPFWALIRVLQGISFAYMFTSIESWLGE
CCEEEEEECEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
AVPARSRGNVMGVYHTAAKLSLIVGPFFLAGLSPLDSRSYVWAGVFLALALVPTCLTTLK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
EPPPPDRKSMPLSQLFTLAPAAVIGVVGAGLVNTGTLALLPVYFEKFELAGGGTAAAAIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
IAIAWIGGLIVQWPAGRISDAIDRRLVIAGLTAVSGAAAILIAVFGSVIGEAGVLVLIGI
HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH
WGAGALCFYGVCVSHAIDRTPPGQVPQVMSGLLFVWAAGSIIGPLISGVAMRMAGAVGLF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAGVMLGLLTVYMIVRVRQRAAAESPPSGERGSILPSPLASVEIMPRDPTEGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
TDTRSVLALILSVMILQLAGGLTGILTPLGLERLGVDASLIGFVAAMNAAGFMLGAWTS
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCC
PRALALVGNIRLFAAGAGVSAAGILSLSLIQEAPFWALIRVLQGISFAYMFTSIESWLGE
CCEEEEEECEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
AVPARSRGNVMGVYHTAAKLSLIVGPFFLAGLSPLDSRSYVWAGVFLALALVPTCLTTLK
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
EPPPPDRKSMPLSQLFTLAPAAVIGVVGAGLVNTGTLALLPVYFEKFELAGGGTAAAAIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
IAIAWIGGLIVQWPAGRISDAIDRRLVIAGLTAVSGAAAILIAVFGSVIGEAGVLVLIGI
HHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEH
WGAGALCFYGVCVSHAIDRTPPGQVPQVMSGLLFVWAAGSIIGPLISGVAMRMAGAVGLF
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFAGVMLGLLTVYMIVRVRQRAAAESPPSGERGSILPSPLASVEIMPRDPTEGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA