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The map label for this gene is sufD [C]

Identifier: 114331235

GI number: 114331235

Start: 1295243

End: 1296550

Strand: Reverse

Name: sufD [C]

Synonym: Neut_1239

Alternate gene names: 114331235

Gene position: 1296550-1295243 (Counterclockwise)

Preceding gene: 114331236

Following gene: 114331234

Centisome position: 48.72

GC content: 45.18

Gene sequence:

>1308_bases
ATGAGCACGGTTATCTGGGATGATTATCTTGAGAAATTGATTGAATCCTGGAGGAAAGAAGGTGAGCCTTCTCGTACTGT
ATCTTATCTAAATCGGCTTCGGGCAAATGCGTTAAGTCGTATCGAGTCACTCAGGCTACCTACGATCCGTGATGAGGAAT
GGCGCTTTACTGATATTTCCTCACTCAGGAATACACTGTTTCCGAGAGCTTCAACGGCTTCATTACCAGGCTTGGATAGC
CAGAAAAGTACTTTTCTGGATGAGCCTACTTGTAGACTGGTATTTGTTGATGGCCAGTATATGCCGGGGCTATCCGGCTT
GACAGATGATGGTTCTATCATTGTTTGTAGTTTATCCGAATTGACTGGTATATGTGCTTCCAAAACAGAACAGTATCTCG
GCCAGCTTGCTGATTTTCAGGATGATGTATTTGTGGCACTGAATACTGCGCTCATGCATGACGGTATTTGTATTGTTATA
CCGGCCAATGTTTCCATAACAGTGCCGGTTCATATTTTATATATTACTTCCGGAAAAGAAGTGGCTGCCTATCCGCGCTG
CTTGCTTGTTGCTGAATCCGAAGCTGAAGTAACAATTGTCGAAGAATATGTGGCGTGGCAGGAAGGCGTATCCCTGACAA
ATGCAGTAACAGAAATATACGTCGGGGAGTCAGCCCGTGTGAATCATATCCGAGTACAACGCGAAGCTTCGCAAGCTTTT
CATATTGCTAATAACTCTACGTTTGTTGCAAAGACAGCACATTATGATTCGGTCAATCTTGCGCTTGGCGCGCGTATTTC
ACGTTTTGACCAGAAAATTACGCTGGCGGGTGAGGGTGCTGAGTGTCAAATAGATGGATTAGCGCTGATAGCTGATCGTC
AGCTCGCAGATACACATACATTCATCGATCATGCCAGTCCGCATGGCAGGAGCAGACAACTTCACAAATGCATTGTGGAC
GAGAGTGCACATGGTGTTTTCAGTGGAGAAATTATGGTTCGTCCACATTCGCAACAGACTGATGCCAGGCAGTTGAACCA
TAATTTGTTGCTGTCAGAAAAAGCACGTATGGATACCAAACCTCAGCTTGAGATATTTGCCGATGATGTTAAATGCGCGC
ATGGCGCCACGGTAGGCCAGCTTGATAAGGAATCCCTTTTTTATCTACAAAGCAGGGGATTCGCAGAAGAAGTAGCCCGC
AATCTGCTGACATACGCATTCGGAGGCGAAATTATTAACCGCGTTATAGTGGCTTCACTCAGGCAACGGCTTGAAGAATA
TATTCTTGTAAGAACACGCATTAGCTAA

Upstream 100 bases:

>100_bases
GACGTATCATCAGAACAAGTGGCAAAGAACTCGCGCAGGCTCTGGAAACGCACGGTTATGACTGGATTCATACAAATGAA
CAAATTACCGGGGCGCTGCC

Downstream 100 bases:

>100_bases
ATCATGAAAATTGTTGACACATTAGTGACTTCATCTGCACAGCAAACAACTACTGTACCTGGAATAGGGCAATTTCGTGC
AGATTTTCCGATTCTTGATA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSTVIWDDYLEKLIESWRKEGEPSRTVSYLNRLRANALSRIESLRLPTIRDEEWRFTDISSLRNTLFPRASTASLPGLDS
QKSTFLDEPTCRLVFVDGQYMPGLSGLTDDGSIIVCSLSELTGICASKTEQYLGQLADFQDDVFVALNTALMHDGICIVI
PANVSITVPVHILYITSGKEVAAYPRCLLVAESEAEVTIVEEYVAWQEGVSLTNAVTEIYVGESARVNHIRVQREASQAF
HIANNSTFVAKTAHYDSVNLALGARISRFDQKITLAGEGAECQIDGLALIADRQLADTHTFIDHASPHGRSRQLHKCIVD
ESAHGVFSGEIMVRPHSQQTDARQLNHNLLLSEKARMDTKPQLEIFADDVKCAHGATVGQLDKESLFYLQSRGFAEEVAR
NLLTYAFGGEIINRVIVASLRQRLEEYILVRTRIS

Sequences:

>Translated_435_residues
MSTVIWDDYLEKLIESWRKEGEPSRTVSYLNRLRANALSRIESLRLPTIRDEEWRFTDISSLRNTLFPRASTASLPGLDS
QKSTFLDEPTCRLVFVDGQYMPGLSGLTDDGSIIVCSLSELTGICASKTEQYLGQLADFQDDVFVALNTALMHDGICIVI
PANVSITVPVHILYITSGKEVAAYPRCLLVAESEAEVTIVEEYVAWQEGVSLTNAVTEIYVGESARVNHIRVQREASQAF
HIANNSTFVAKTAHYDSVNLALGARISRFDQKITLAGEGAECQIDGLALIADRQLADTHTFIDHASPHGRSRQLHKCIVD
ESAHGVFSGEIMVRPHSQQTDARQLNHNLLLSEKARMDTKPQLEIFADDVKCAHGATVGQLDKESLFYLQSRGFAEEVAR
NLLTYAFGGEIINRVIVASLRQRLEEYILVRTRIS
>Mature_434_residues
STVIWDDYLEKLIESWRKEGEPSRTVSYLNRLRANALSRIESLRLPTIRDEEWRFTDISSLRNTLFPRASTASLPGLDSQ
KSTFLDEPTCRLVFVDGQYMPGLSGLTDDGSIIVCSLSELTGICASKTEQYLGQLADFQDDVFVALNTALMHDGICIVIP
ANVSITVPVHILYITSGKEVAAYPRCLLVAESEAEVTIVEEYVAWQEGVSLTNAVTEIYVGESARVNHIRVQREASQAFH
IANNSTFVAKTAHYDSVNLALGARISRFDQKITLAGEGAECQIDGLALIADRQLADTHTFIDHASPHGRSRQLHKCIVDE
SAHGVFSGEIMVRPHSQQTDARQLNHNLLLSEKARMDTKPQLEIFADDVKCAHGATVGQLDKESLFYLQSRGFAEEVARN
LLTYAFGGEIINRVIVASLRQRLEEYILVRTRIS

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=384, Percent_Identity=34.6354166666667, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI87081955, Length=313, Percent_Identity=24.2811501597444, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 48401; Mature: 48270

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVIWDDYLEKLIESWRKEGEPSRTVSYLNRLRANALSRIESLRLPTIRDEEWRFTDIS
CCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHH
SLRNTLFPRASTASLPGLDSQKSTFLDEPTCRLVFVDGQYMPGLSGLTDDGSIIVCSLSE
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHH
LTGICASKTEQYLGQLADFQDDVFVALNTALMHDGICIVIPANVSITVPVHILYITSGKE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCEEEEECCCEEEEEEEEEEEEECCCC
VAAYPRCLLVAESEAEVTIVEEYVAWQEGVSLTNAVTEIYVGESARVNHIRVQREASQAF
EECCCEEEEEECCCCCEEEHHHHHHHHHCCHHHHHHHHEEECCCCCEEEEEEEEHHCCEE
HIANNSTFVAKTAHYDSVNLALGARISRFDQKITLAGEGAECQIDGLALIADRQLADTHT
EEECCCEEEEEECCCCCEEEECCCHHHHCCCEEEEECCCCEEEECCEEEEECCCHHHHHH
FIDHASPHGRSRQLHKCIVDESAHGVFSGEIMVRPHSQQTDARQLNHNLLLSEKARMDTK
HHHCCCCCCCCHHHHHHHHCCCCCCEEECEEEECCCCCCCHHHHHCCCEEEEHHHCCCCC
PQLEIFADDVKCAHGATVGQLDKESLFYLQSRGFAEEVARNLLTYAFGGEIINRVIVASL
CCEEEEECCHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRLEEYILVRTRIS
HHHHHHHHHEEEECC
>Mature Secondary Structure 
STVIWDDYLEKLIESWRKEGEPSRTVSYLNRLRANALSRIESLRLPTIRDEEWRFTDIS
CCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHH
SLRNTLFPRASTASLPGLDSQKSTFLDEPTCRLVFVDGQYMPGLSGLTDDGSIIVCSLSE
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEHHH
LTGICASKTEQYLGQLADFQDDVFVALNTALMHDGICIVIPANVSITVPVHILYITSGKE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCEEEEECCCEEEEEEEEEEEEECCCC
VAAYPRCLLVAESEAEVTIVEEYVAWQEGVSLTNAVTEIYVGESARVNHIRVQREASQAF
EECCCEEEEEECCCCCEEEHHHHHHHHHCCHHHHHHHHEEECCCCCEEEEEEEEHHCCEE
HIANNSTFVAKTAHYDSVNLALGARISRFDQKITLAGEGAECQIDGLALIADRQLADTHT
EEECCCEEEEEECCCCCEEEECCCHHHHCCCEEEEECCCCEEEECCEEEEECCCHHHHHH
FIDHASPHGRSRQLHKCIVDESAHGVFSGEIMVRPHSQQTDARQLNHNLLLSEKARMDTK
HHHCCCCCCCCHHHHHHHHCCCCCCEEECEEEECCCCCCCHHHHHCCCEEEEHHHCCCCC
PQLEIFADDVKCAHGATVGQLDKESLFYLQSRGFAEEVARNLLTYAFGGEIINRVIVASL
CCEEEEECCHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRLEEYILVRTRIS
HHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]