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The map label for this gene is sufC [C]

Identifier: 114331236

GI number: 114331236

Start: 1296547

End: 1297338

Strand: Reverse

Name: sufC [C]

Synonym: Neut_1240

Alternate gene names: 114331236

Gene position: 1297338-1296547 (Counterclockwise)

Preceding gene: 114331237

Following gene: 114331235

Centisome position: 48.75

GC content: 45.71

Gene sequence:

>792_bases
ATGATAAATGCAAATAGCAAGATTCTGCTTGAAGTCCATGATTTACATGCAACAGTTAGCGGAGCCGAGATTCTCAAAGG
AGTGGATATCACGGTAAGGAGTGGCGAGATCCATGCCATTATGGGATTAAATGGCTCGGGAAAGAGTACCTTTGCTAAGG
TGCTGGCTGGTCATCCGAGCTATGAAGTTACCCGGGGAACGCTGTTGTTTGATGGTCAGGATCTGTCAGCATTGGCACCA
GAAGAGCGTGCGCGTGCAGGGATATTTCTCGCTTTTCAATATCCGGTAGAAATACCGGGCGTTGCTAATAACCAATTTCT
ACGGTTGGCTTATAACACTGTCCAGGGGCAACGCGGTGAGGAAGAGCTAGATCCTCTTGAGTTCGATGATTTCGTGCGCG
AGAAAATGAAACTGCTCAAGATGAATCCGGATTTTCTTGATCGCAGCGTTAATGAAGGATTCTCAGGAGGCGAAAAGAAA
CGCAACGAAATATTGCAGATGGCTTTACTTGAACCCCGTCTTGCTTTGCTGGATGAAACGGATTCAGGATTGGATATTGA
TGCGCTCAGAATAGTTGCCAATGGGGTTAACCAGTTATCCAATAAAGATAATGCCCTGATTTTGGTAACACATTATCAGC
GTTTGCTGGATTATATTGTTCCTGATTATGTGCATGTAATGGAGGCAGGACGTATCATCAGAACAAGTGGCAAAGAACTC
GCGCAGGCTCTGGAAACGCACGGTTATGACTGGATTCATACAAATGAACAAATTACCGGGGCGCTGCCATGA

Upstream 100 bases:

>100_bases
TTATTAATGGTTTTTGTAAAGAGGTTTTTCAGCAATTACCTTTGGAATTTGCAGTAGAGGCCACTAAATTACTCAGCTTC
AAACTGGAAGGGAGTGTCGG

Downstream 100 bases:

>100_bases
GCACGGTTATCTGGGATGATTATCTTGAGAAATTGATTGAATCCTGGAGGAAAGAAGGTGAGCCTTCTCGTACTGTATCT
TATCTAAATCGGCTTCGGGC

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MINANSKILLEVHDLHATVSGAEILKGVDITVRSGEIHAIMGLNGSGKSTFAKVLAGHPSYEVTRGTLLFDGQDLSALAP
EERARAGIFLAFQYPVEIPGVANNQFLRLAYNTVQGQRGEEELDPLEFDDFVREKMKLLKMNPDFLDRSVNEGFSGGEKK
RNEILQMALLEPRLALLDETDSGLDIDALRIVANGVNQLSNKDNALILVTHYQRLLDYIVPDYVHVMEAGRIIRTSGKEL
AQALETHGYDWIHTNEQITGALP

Sequences:

>Translated_263_residues
MINANSKILLEVHDLHATVSGAEILKGVDITVRSGEIHAIMGLNGSGKSTFAKVLAGHPSYEVTRGTLLFDGQDLSALAP
EERARAGIFLAFQYPVEIPGVANNQFLRLAYNTVQGQRGEEELDPLEFDDFVREKMKLLKMNPDFLDRSVNEGFSGGEKK
RNEILQMALLEPRLALLDETDSGLDIDALRIVANGVNQLSNKDNALILVTHYQRLLDYIVPDYVHVMEAGRIIRTSGKEL
AQALETHGYDWIHTNEQITGALP
>Mature_263_residues
MINANSKILLEVHDLHATVSGAEILKGVDITVRSGEIHAIMGLNGSGKSTFAKVLAGHPSYEVTRGTLLFDGQDLSALAP
EERARAGIFLAFQYPVEIPGVANNQFLRLAYNTVQGQRGEEELDPLEFDDFVREKMKLLKMNPDFLDRSVNEGFSGGEKK
RNEILQMALLEPRLALLDETDSGLDIDALRIVANGVNQLSNKDNALILVTHYQRLLDYIVPDYVHVMEAGRIIRTSGKEL
AQALETHGYDWIHTNEQITGALP

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=210, Percent_Identity=28.0952380952381, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787972, Length=244, Percent_Identity=59.0163934426229, Blast_Score=300, Evalue=6e-83,
Organism=Escherichia coli, GI1786698, Length=205, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787500, Length=276, Percent_Identity=28.6231884057971, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48995001, Length=238, Percent_Identity=30.2521008403361, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=234, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=25.7777777777778, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=28.4444444444444, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=28.5067873303167, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=30.4761904761905, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=251, Percent_Identity=26.6932270916335, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790190, Length=226, Percent_Identity=25.6637168141593, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=28.6343612334802, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787547, Length=235, Percent_Identity=28.936170212766, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=24.0343347639485, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789864, Length=241, Percent_Identity=24.896265560166, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI48994883, Length=243, Percent_Identity=28.8065843621399, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=26.3829787234043, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29107; Mature: 29107

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINANSKILLEVHDLHATVSGAEILKGVDITVRSGEIHAIMGLNGSGKSTFAKVLAGHPS
CCCCCCEEEEEEEEHHHHCCHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCC
YEVTRGTLLFDGQDLSALAPEERARAGIFLAFQYPVEIPGVANNQFLRLAYNTVQGQRGE
CEEEEEEEEECCCCCCCCCCHHHCCCCEEEEEECCEECCCCCCCCEEEEEEEHHCCCCCC
EELDPLEFDDFVREKMKLLKMNPDFLDRSVNEGFSGGEKKRNEILQMALLEPRLALLDET
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEECCC
DSGLDIDALRIVANGVNQLSNKDNALILVTHYQRLLDYIVPDYVHVMEAGRIIRTSGKEL
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEECCCHHH
AQALETHGYDWIHTNEQITGALP
HHHHHHCCCCEEECCCEEECCCC
>Mature Secondary Structure
MINANSKILLEVHDLHATVSGAEILKGVDITVRSGEIHAIMGLNGSGKSTFAKVLAGHPS
CCCCCCEEEEEEEEHHHHCCHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCC
YEVTRGTLLFDGQDLSALAPEERARAGIFLAFQYPVEIPGVANNQFLRLAYNTVQGQRGE
CEEEEEEEEECCCCCCCCCCHHHCCCCEEEEEECCEECCCCCCCCEEEEEEEHHCCCCCC
EELDPLEFDDFVREKMKLLKMNPDFLDRSVNEGFSGGEKKRNEILQMALLEPRLALLDET
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEECCC
DSGLDIDALRIVANGVNQLSNKDNALILVTHYQRLLDYIVPDYVHVMEAGRIIRTSGKEL
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEEECCCHHH
AQALETHGYDWIHTNEQITGALP
HHHHHHCCCCEEECCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]