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The map label for this gene is ndh [H]

Identifier: 113477516

GI number: 113477516

Start: 6316470

End: 6317687

Strand: Reverse

Name: ndh [H]

Synonym: Tery_4096

Alternate gene names: 113477516

Gene position: 6317687-6316470 (Counterclockwise)

Preceding gene: 113477519

Following gene: 113477515

Centisome position: 81.52

GC content: 33.09

Gene sequence:

>1218_bases
ATGGAAACTGGAGAAATACCTCAAGGAGAAAAACCAAGTAATAAAATCACAAAAATTTGCATATTGGGTAGTGGCTTTGG
TGGTCTTTACACGGCATTGTATCTGAATAGTTTTTGGGGTTTTAAACATAAAAATTGTGAAGTTATATTAATAGATCAAC
ATGATCATCTTGTTTTTACTCCCCTACTGTATGAGGTAATTACAGATGAACTCCAAACTTGGGAAATAGCTCCCTCTTTT
GCTAAACTTCTACAAAATAAGAAAATACTTTTTTGTCAAGATACGATTCAAAATATTGATTTTAAAGCTCGTAAAGTTAA
ACTTTTAGAACAAGGAAGTTTAGCTTATGACTACTTAGTTATTACGGTGGGTGTTACTAATGGAAAATTACCAACTACTG
CAGAAAATGTTTTAACATTCCGAACTTTAGCTGATGCTCAAATATTAGAGAAAAAACTACAAACTTTGGAAAATTCTAAT
CAAGAATTAATTCGAGTATCTATTGTGGGTGGTGGTCCAAGTGGAGTAGAGTTGGCAGGAAAAATAGCAGATAGATTAGG
AAGACGAGGAGAAATACGCTTAATAGAAAGAGGAAAAGAAATACTAAAAAACTTTACTCCAGCTACTCGTAAAAATGCTC
AACGTGCTTTAGATAAACGAAATGTTTTAATAAGTTTAGAGACAACTGTTGATACTATTGAAGTTGACAAAATTACTTTA
TGGCAGTCTAATGAAAGTGTTATTATTCTAACAGATTTGGTACTGTGGACTGCAGGTACTCAAGTAAGAGAGTGGGTTAA
AAATTTGAATTGTTACCACAATTCTAGAGGTCAACTTATTTGCGAGCAAACTTTACAATTAGTTGGCTATTCAGAAGTTT
TTGCCTTGGGAGATATTGCTGAGATTTTATATCCCAATGGTAAAAAACTTCCAGCTACAGCTCAAGTTGCTTATCAACAA
GCAAGTCAAGCAGCAAAAAATCTCTGGGCAATTTTAAATAATAAACGTCCCAAACCTTTTCGTTATTTACACTTAGGAGA
AATGATTACTTTGGGAGTAAATTCTGCTGCTGTTTCGAGTTTTGGTATTAGTTTGCATGGTTGGTTAGCTGCTTTAGTGA
GACTTAGTGTTTATTTACAACGTTTACCGACTTTTTCTCATGGTTTTCAGGTTTTATGTAATAGATTGAAAATTTGGCTA
GCTAAAAGGAAAAGATAA

Upstream 100 bases:

>100_bases
CTTTGCGCTCTTATTGAATAAAGCGATCGCTTCCAAAAGTTAATTTTATATTATACAATCTAGCAACACAAAAGGTTAAT
ATTTATCAACATGAGAAACT

Downstream 100 bases:

>100_bases
CAAAGTAAATTAAACGTTAATTTCAGTCTGAAAATAGATATTAAATAAAGCCTAGTATGATGAAAGTAGGTGAGGAATAA
CACAAAAATTAATTAAATGC

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
METGEIPQGEKPSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFTPLLYEVITDELQTWEIAPSF
AKLLQNKKILFCQDTIQNIDFKARKVKLLEQGSLAYDYLVITVGVTNGKLPTTAENVLTFRTLADAQILEKKLQTLENSN
QELIRVSIVGGGPSGVELAGKIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISLETTVDTIEVDKITL
WQSNESVIILTDLVLWTAGTQVREWVKNLNCYHNSRGQLICEQTLQLVGYSEVFALGDIAEILYPNGKKLPATAQVAYQQ
ASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVSSFGISLHGWLAALVRLSVYLQRLPTFSHGFQVLCNRLKIWL
AKRKR

Sequences:

>Translated_405_residues
METGEIPQGEKPSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFTPLLYEVITDELQTWEIAPSF
AKLLQNKKILFCQDTIQNIDFKARKVKLLEQGSLAYDYLVITVGVTNGKLPTTAENVLTFRTLADAQILEKKLQTLENSN
QELIRVSIVGGGPSGVELAGKIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISLETTVDTIEVDKITL
WQSNESVIILTDLVLWTAGTQVREWVKNLNCYHNSRGQLICEQTLQLVGYSEVFALGDIAEILYPNGKKLPATAQVAYQQ
ASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVSSFGISLHGWLAALVRLSVYLQRLPTFSHGFQVLCNRLKIWL
AKRKR
>Mature_405_residues
METGEIPQGEKPSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFTPLLYEVITDELQTWEIAPSF
AKLLQNKKILFCQDTIQNIDFKARKVKLLEQGSLAYDYLVITVGVTNGKLPTTAENVLTFRTLADAQILEKKLQTLENSN
QELIRVSIVGGGPSGVELAGKIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISLETTVDTIEVDKITL
WQSNESVIILTDLVLWTAGTQVREWVKNLNCYHNSRGQLICEQTLQLVGYSEVFALGDIAEILYPNGKKLPATAQVAYQQ
ASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVSSFGISLHGWLAALVRLSVYLQRLPTFSHGFQVLCNRLKIWL
AKRKR

Specific function: Transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Does not couple the redox reaction to proton translocation [H]

COG id: COG1252

COG function: function code C; NADH dehydrogenase, FAD-containing subunit

Gene ontology:

Cell location: Cell membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1787352, Length=404, Percent_Identity=26.980198019802, Blast_Score=120, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6320118, Length=454, Percent_Identity=24.6696035242291, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.6.99.3 [H]

Molecular weight: Translated: 45503; Mature: 45503

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGEIPQGEKPSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFT
CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHH
PLLYEVITDELQTWEIAPSFAKLLQNKKILFCQDTIQNIDFKARKVKLLEQGSLAYDYLV
HHHHHHHHHHHHHEECCHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHCCCCEEEEEE
ITVGVTNGKLPTTAENVLTFRTLADAQILEKKLQTLENSNQELIRVSIVGGGPSGVELAG
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHH
KIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISLETTVDTIEVDKITL
HHHHHCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEE
WQSNESVIILTDLVLWTAGTQVREWVKNLNCYHNSRGQLICEQTLQLVGYSEVFALGDIA
EECCCCEEEEEEHHHHCCCHHHHHHHHHCCCEECCCCCEEHHHHHHHHCHHHHHHHHHHH
EILYPNGKKLPATAQVAYQQASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVSS
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCHHHHHH
FGISLHGWLAALVRLSVYLQRLPTFSHGFQVLCNRLKIWLAKRKR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
METGEIPQGEKPSNKITKICILGSGFGGLYTALYLNSFWGFKHKNCEVILIDQHDHLVFT
CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHH
PLLYEVITDELQTWEIAPSFAKLLQNKKILFCQDTIQNIDFKARKVKLLEQGSLAYDYLV
HHHHHHHHHHHHHEECCHHHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHCCCCEEEEEE
ITVGVTNGKLPTTAENVLTFRTLADAQILEKKLQTLENSNQELIRVSIVGGGPSGVELAG
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHH
KIADRLGRRGEIRLIERGKEILKNFTPATRKNAQRALDKRNVLISLETTVDTIEVDKITL
HHHHHCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEE
WQSNESVIILTDLVLWTAGTQVREWVKNLNCYHNSRGQLICEQTLQLVGYSEVFALGDIA
EECCCCEEEEEEHHHHCCCHHHHHHHHHCCCEECCCCCEEHHHHHHHHCHHHHHHHHHHH
EILYPNGKKLPATAQVAYQQASQAAKNLWAILNNKRPKPFRYLHLGEMITLGVNSAAVSS
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCHHHHHH
FGISLHGWLAALVRLSVYLQRLPTFSHGFQVLCNRLKIWLAKRKR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 6265208; 8905232; 9278503 [H]