| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477504
Identifier: 113477504
GI number: 113477504
Start: 6302090
End: 6303325
Strand: Reverse
Name: 113477504
Synonym: Tery_4083
Alternate gene names: NA
Gene position: 6303325-6302090 (Counterclockwise)
Preceding gene: 113477508
Following gene: 113477500
Centisome position: 81.33
GC content: 35.6
Gene sequence:
>1236_bases ATGAATCAAAGTTCTATAGTTAAATATACTAAAAATTCTACCCAGGAATTGAATCCAACTTTACAAGCTGTAATTGAAAA TTTGGATGTAGAGTTAGAAGCAGAACTAACAAGATATCGCAAGTACCGTAGACAAGCAGAAAATTCGTCAGTTCCTAATA AAAATAGTAATAAACAAATTTATAAAATACCCGAATTAATGTCTGTATTACCAGTGGATAACCAAACAGTATCCTCGTTG CCATTATCTGAAACCGATACACCGCGGCCGCTGGAAAACTCTGAAAATTTTAATACTTCTACCAAAGAAAGTGTACCATT AGTGTACGATCCTCCCACACCAAAAGAAGATCCTATACCCAAAAAAGGCGATGTAGAAAATCATAATAGTGAGAAACAAA CATCTCAATTAAATAATGATAGTTCAATAGCACCAAATAATTATCTTGAATCTTCAGAGAAACTTCTAGAAGGTTTAGAT ACATTAAAATCAAATCGTCAGAAGAAATCTACTTACTTAACAAGTTTGTTTACTCCTCTGGGAATAGTTTCTATGTTTTT GTTTTTGATCTCTTGTGCGACTTTGGGTCATGTTGTTCTTAACCCATCAGGTCTAAGTAATCTGGGTTTAGGTTTAGACC GTCTGTTGAAAGGTTCTTCTGCTCAAAAAAACACTGATGATCTTCCAAGTACAAATGAGCAGCCTTTACCGAATTCCCCT GACTTGGCTTCTGTTGAATTTGTAGATTTAGATTTGAATACTCTAAGTAACATTGACCCATCACCTAGTCAGTTCCCATC CCCTACTGCAACAGTCAAACCAGTTGTTCCACCACAAATATCGGGAAGTGTTAATAATGCTCCACAACTTACTAATAGTT CAATTGCACAGTTGGATAATCTCAAGACTACTTTATGGCCTGAAAATACTCAATCTTCTCCAACTCCATCGCCAATAGCT AAACCTTCCCCACAAATTTCTATTAGTTCAAAGATAACTAATCCCATAAAATCAGATGATGGTTGGTACTATGTAGTTGT AGATTATGGGAATGAAGAATCTTTGTCTCAAGCACGGCAAATAATTTCGGATGCTTATATTCGTGAAACGACTAATGGTA TCAAAATACAGATGGGAGCATTTCCGGAGCCAGAAAGGGCAAAAATCTTTCTTCAAAGATTACGCGAGGAAGGACTGGAG CCAAAATATTACAAATTAAAACCTGAGAATTATTGA
Upstream 100 bases:
>100_bases AAGGTTTTTTGGGTTAGCTAGAACTTGCAAGGGAGCTTGAAAAAGCCAAAATAGCCACGCCAAATCTTTTTCAATTAATA TAACTAGTAGGAGTTCTTAA
Downstream 100 bases:
>100_bases TTAGAGCTTGCTAATTAAATCTAAAAAACTTACACAGTTACAATTTAAGGTATTTTGAACTAGAGATTCTACTCTGTTTT TAGCTAGAATATACCAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MNQSSIVKYTKNSTQELNPTLQAVIENLDVELEAELTRYRKYRRQAENSSVPNKNSNKQIYKIPELMSVLPVDNQTVSSL PLSETDTPRPLENSENFNTSTKESVPLVYDPPTPKEDPIPKKGDVENHNSEKQTSQLNNDSSIAPNNYLESSEKLLEGLD TLKSNRQKKSTYLTSLFTPLGIVSMFLFLISCATLGHVVLNPSGLSNLGLGLDRLLKGSSAQKNTDDLPSTNEQPLPNSP DLASVEFVDLDLNTLSNIDPSPSQFPSPTATVKPVVPPQISGSVNNAPQLTNSSIAQLDNLKTTLWPENTQSSPTPSPIA KPSPQISISSKITNPIKSDDGWYYVVVDYGNEESLSQARQIISDAYIRETTNGIKIQMGAFPEPERAKIFLQRLREEGLE PKYYKLKPENY
Sequences:
>Translated_411_residues MNQSSIVKYTKNSTQELNPTLQAVIENLDVELEAELTRYRKYRRQAENSSVPNKNSNKQIYKIPELMSVLPVDNQTVSSL PLSETDTPRPLENSENFNTSTKESVPLVYDPPTPKEDPIPKKGDVENHNSEKQTSQLNNDSSIAPNNYLESSEKLLEGLD TLKSNRQKKSTYLTSLFTPLGIVSMFLFLISCATLGHVVLNPSGLSNLGLGLDRLLKGSSAQKNTDDLPSTNEQPLPNSP DLASVEFVDLDLNTLSNIDPSPSQFPSPTATVKPVVPPQISGSVNNAPQLTNSSIAQLDNLKTTLWPENTQSSPTPSPIA KPSPQISISSKITNPIKSDDGWYYVVVDYGNEESLSQARQIISDAYIRETTNGIKIQMGAFPEPERAKIFLQRLREEGLE PKYYKLKPENY >Mature_411_residues MNQSSIVKYTKNSTQELNPTLQAVIENLDVELEAELTRYRKYRRQAENSSVPNKNSNKQIYKIPELMSVLPVDNQTVSSL PLSETDTPRPLENSENFNTSTKESVPLVYDPPTPKEDPIPKKGDVENHNSEKQTSQLNNDSSIAPNNYLESSEKLLEGLD TLKSNRQKKSTYLTSLFTPLGIVSMFLFLISCATLGHVVLNPSGLSNLGLGLDRLLKGSSAQKNTDDLPSTNEQPLPNSP DLASVEFVDLDLNTLSNIDPSPSQFPSPTATVKPVVPPQISGSVNNAPQLTNSSIAQLDNLKTTLWPENTQSSPTPSPIA KPSPQISISSKITNPIKSDDGWYYVVVDYGNEESLSQARQIISDAYIRETTNGIKIQMGAFPEPERAKIFLQRLREEGLE PKYYKLKPENY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45521; Mature: 45521
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQSSIVKYTKNSTQELNPTLQAVIENLDVELEAELTRYRKYRRQAENSSVPNKNSNKQI CCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCEE YKIPELMSVLPVDNQTVSSLPLSETDTPRPLENSENFNTSTKESVPLVYDPPTPKEDPIP EECHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC KKGDVENHNSEKQTSQLNNDSSIAPNNYLESSEKLLEGLDTLKSNRQKKSTYLTSLFTPL CCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIVSMFLFLISCATLGHVVLNPSGLSNLGLGLDRLLKGSSAQKNTDDLPSTNEQPLPNSP HHHHHHHHHHHHHHHHHEEECCCCCCHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DLASVEFVDLDLNTLSNIDPSPSQFPSPTATVKPVVPPQISGSVNNAPQLTNSSIAQLDN CCCEEEEEECCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHC LKTTLWPENTQSSPTPSPIAKPSPQISISSKITNPIKSDDGWYYVVVDYGNEESLSQARQ CCCEECCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHH IISDAYIRETTNGIKIQMGAFPEPERAKIFLQRLREEGLEPKYYKLKPENY HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC >Mature Secondary Structure MNQSSIVKYTKNSTQELNPTLQAVIENLDVELEAELTRYRKYRRQAENSSVPNKNSNKQI CCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCEE YKIPELMSVLPVDNQTVSSLPLSETDTPRPLENSENFNTSTKESVPLVYDPPTPKEDPIP EECHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC KKGDVENHNSEKQTSQLNNDSSIAPNNYLESSEKLLEGLDTLKSNRQKKSTYLTSLFTPL CCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIVSMFLFLISCATLGHVVLNPSGLSNLGLGLDRLLKGSSAQKNTDDLPSTNEQPLPNSP HHHHHHHHHHHHHHHHHEEECCCCCCHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DLASVEFVDLDLNTLSNIDPSPSQFPSPTATVKPVVPPQISGSVNNAPQLTNSSIAQLDN CCCEEEEEECCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHC LKTTLWPENTQSSPTPSPIAKPSPQISISSKITNPIKSDDGWYYVVVDYGNEESLSQARQ CCCEECCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHH IISDAYIRETTNGIKIQMGAFPEPERAKIFLQRLREEGLEPKYYKLKPENY HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA