Click here to switch to the map view.

The map label for this gene is ytxM [H]

Identifier: 113477492

GI number: 113477492

Start: 6283409

End: 6284266

Strand: Reverse

Name: ytxM [H]

Synonym: Tery_4069

Alternate gene names: 113477492

Gene position: 6284266-6283409 (Counterclockwise)

Preceding gene: 113477493

Following gene: 113477491

Centisome position: 81.09

GC content: 29.02

Gene sequence:

>858_bases
ATGTTTAATGGGAAAAATTATAAATTCAACTACTCCTTATCTCAAAAAAACAATAAAACAATAATTTTATTGTTACATGG
ATTTATGGGTAGTAGTAATGATTTTATAGAAATTATCCCTGAGTTATCTAAAAAATTTTGCTGTCTAACAGTTGATTTAC
CAGGACATGGAAAAACTAGAGTTTTTGATAGTGAAAAACATTACAATATGCACAATACTGCCACAGCATTGATTGGTTTA
TTAGATAATTTAAATATTGAAAAATGTTATTTATTTGGCTATTCAATGGGAGGAAGATTGGCATTATATCTAGGGATAAA
TTTTCCAACTCGGTTTGAAAAAATAATATTAGAATCAGCATCTCCAGGACTAAAGAGTAAAGCAGAGCGATCGCTTCGTT
GTCAGTCAGATTTTCAATTAGCTAATAAGTTAGAAAATAGCAATTTTAAAGAGTTTTTAATTAACTGGTATAATCAACCG
TTATTTGAATCTTTGAGGCAGCATAATAATTTTGAAAAGCTCATAGAAAGACGGTTAGAAAATAATCCATTGGAATTAGG
AAAATCTCTCCGAAATTTGGGAATAGGTAACCAACCCTCACTTTGGAATAAATTATCAAATCATCAGATTCCTACATTAT
TAATGGTGGGAAAGTATGATCATAAATTTAAAGCTATTAATACAGAAATAGCAGAATTATGCCTGCCTGCTAAGTTGAAA
GTAATTGGTGAATCTGGCCATAATATTCACTGGGAAAATCCTAGAGAATGGATGGAAACTATAATAAATTTCTTGATAAA
GGGAAAGAAAAAAACTAATATAAGTTTAAAAAATACTACTAGAGTAACCTTTTTTTAG

Upstream 100 bases:

>100_bases
TTATTTCCGTTACTTATTTATTACCAGGATTCTTGGTAAAATTATTTTTTTTAAAGGATATAAATAAATATTAAATTACT
TTATTCATAATTATTGATTA

Downstream 100 bases:

>100_bases
TAGCTAGAGAATGAATACCTTCGTTTAGCAATATAGAAAATTCAAGATCAAAGTTTTTCCTAACTCCTAACTATTTTTTT
ACTCTAATTTTTTTTAAATT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MFNGKNYKFNYSLSQKNNKTIILLLHGFMGSSNDFIEIIPELSKKFCCLTVDLPGHGKTRVFDSEKHYNMHNTATALIGL
LDNLNIEKCYLFGYSMGGRLALYLGINFPTRFEKIILESASPGLKSKAERSLRCQSDFQLANKLENSNFKEFLINWYNQP
LFESLRQHNNFEKLIERRLENNPLELGKSLRNLGIGNQPSLWNKLSNHQIPTLLMVGKYDHKFKAINTEIAELCLPAKLK
VIGESGHNIHWENPREWMETIINFLIKGKKKTNISLKNTTRVTFF

Sequences:

>Translated_285_residues
MFNGKNYKFNYSLSQKNNKTIILLLHGFMGSSNDFIEIIPELSKKFCCLTVDLPGHGKTRVFDSEKHYNMHNTATALIGL
LDNLNIEKCYLFGYSMGGRLALYLGINFPTRFEKIILESASPGLKSKAERSLRCQSDFQLANKLENSNFKEFLINWYNQP
LFESLRQHNNFEKLIERRLENNPLELGKSLRNLGIGNQPSLWNKLSNHQIPTLLMVGKYDHKFKAINTEIAELCLPAKLK
VIGESGHNIHWENPREWMETIINFLIKGKKKTNISLKNTTRVTFF
>Mature_285_residues
MFNGKNYKFNYSLSQKNNKTIILLLHGFMGSSNDFIEIIPELSKKFCCLTVDLPGHGKTRVFDSEKHYNMHNTATALIGL
LDNLNIEKCYLFGYSMGGRLALYLGINFPTRFEKIILESASPGLKSKAERSLRCQSDFQLANKLENSNFKEFLINWYNQP
LFESLRQHNNFEKLIERRLENNPLELGKSLRNLGIGNQPSLWNKLSNHQIPTLLMVGKYDHKFKAINTEIAELCLPAKLK
VIGESGHNIHWENPREWMETIINFLIKGKKKTNISLKNTTRVTFF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lipase/esterase LIP3/BchO family [H]

Homologues:

Organism=Escherichia coli, GI1788598, Length=244, Percent_Identity=30.327868852459, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639
- InterPro:   IPR022485 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 32919; Mature: 32919

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNGKNYKFNYSLSQKNNKTIILLLHGFMGSSNDFIEIIPELSKKFCCLTVDLPGHGKTR
CCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCE
VFDSEKHYNMHNTATALIGLLDNLNIEKCYLFGYSMGGRLALYLGINFPTRFEKIILESA
EECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCC
SPGLKSKAERSLRCQSDFQLANKLENSNFKEFLINWYNQPLFESLRQHNNFEKLIERRLE
CCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHC
NNPLELGKSLRNLGIGNQPSLWNKLSNHQIPTLLMVGKYDHKFKAINTEIAELCLPAKLK
CCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
VIGESGHNIHWENPREWMETIINFLIKGKKKTNISLKNTTRVTFF
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEC
>Mature Secondary Structure
MFNGKNYKFNYSLSQKNNKTIILLLHGFMGSSNDFIEIIPELSKKFCCLTVDLPGHGKTR
CCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCE
VFDSEKHYNMHNTATALIGLLDNLNIEKCYLFGYSMGGRLALYLGINFPTRFEKIILESA
EECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCC
SPGLKSKAERSLRCQSDFQLANKLENSNFKEFLINWYNQPLFESLRQHNNFEKLIERRLE
CCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHC
NNPLELGKSLRNLGIGNQPSLWNKLSNHQIPTLLMVGKYDHKFKAINTEIAELCLPAKLK
CCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
VIGESGHNIHWENPREWMETIINFLIKGKKKTNISLKNTTRVTFF
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8566759; 9387221; 9384377 [H]