| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477390
Identifier: 113477390
GI number: 113477390
Start: 6107560
End: 6107982
Strand: Reverse
Name: 113477390
Synonym: Tery_3950
Alternate gene names: NA
Gene position: 6107982-6107560 (Counterclockwise)
Preceding gene: 113477391
Following gene: 113477389
Centisome position: 78.81
GC content: 34.04
Gene sequence:
>423_bases ATGACTAAGACACCAGAAGAACTATATAAAGAAGGGCTAGAAAGATATAAAGCTGGAGAAAAGGCAGGTACTTTAATTCC ACTATTTAAAGAAATTACAGATCGCTCTCCTAAAAGTAGTAGTAGTTGGATTAGTTTATCGTGGTTATATTTATTAGAGA AAAAACCTAAATCAGCTCATAAAGCAGCTAAGGAAGGATTTAAGCTTAACCCAGACGATCCACAGGGGAGAATTAATTTG GCTTTAGCAATGTTAGAAATAGAAAAAAAGGGTGTTAGACCTCATGTAGAGAAAGCCCAACAATTGATTATGGCTGATGA AGATTGGCTCAAAGAAATTAAAAATAATATTAAGGATGGTTTTGATAGAAGAGGTGAATGGCCAGCACTGGCTCGAATTA AACAATGGTTATTTGATATTTAA
Upstream 100 bases:
>100_bases AAAAATATATAGAATACGCATCTTGCCCCCTTGTACTTTACCTGGGTGAAATCAAACGTGTTATAATTTTCTAAATTAGA AAACCTCGAAAAATATTATT
Downstream 100 bases:
>100_bases GCTGATTTTTTTACTAAATTAAATAGTTAAAACATAAATAAGCTTTTAAGAGTCCTGATTTACCCAAAGGTACTAATAAT AACTAGGGTAGGATGAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTKTPEELYKEGLERYKAGEKAGTLIPLFKEITDRSPKSSSSWISLSWLYLLEKKPKSAHKAAKEGFKLNPDDPQGRINL ALAMLEIEKKGVRPHVEKAQQLIMADEDWLKEIKNNIKDGFDRRGEWPALARIKQWLFDI
Sequences:
>Translated_140_residues MTKTPEELYKEGLERYKAGEKAGTLIPLFKEITDRSPKSSSSWISLSWLYLLEKKPKSAHKAAKEGFKLNPDDPQGRINL ALAMLEIEKKGVRPHVEKAQQLIMADEDWLKEIKNNIKDGFDRRGEWPALARIKQWLFDI >Mature_139_residues TKTPEELYKEGLERYKAGEKAGTLIPLFKEITDRSPKSSSSWISLSWLYLLEKKPKSAHKAAKEGFKLNPDDPQGRINLA LAMLEIEKKGVRPHVEKAQQLIMADEDWLKEIKNNIKDGFDRRGEWPALARIKQWLFDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16178; Mature: 16047
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTPEELYKEGLERYKAGEKAGTLIPLFKEITDRSPKSSSSWISLSWLYLLEKKPKSAH CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHH KAAKEGFKLNPDDPQGRINLALAMLEIEKKGVRPHVEKAQQLIMADEDWLKEIKNNIKDG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH FDRRGEWPALARIKQWLFDI HHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TKTPEELYKEGLERYKAGEKAGTLIPLFKEITDRSPKSSSSWISLSWLYLLEKKPKSAH CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHH KAAKEGFKLNPDDPQGRINLALAMLEIEKKGVRPHVEKAQQLIMADEDWLKEIKNNIKDG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH FDRRGEWPALARIKQWLFDI HHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA