BacMap

Definition	Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession	NC_008312
Length	7,750,108

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The map label for this gene is ucpA [C]

Identifier: 113477370

GI number: 113477370

Start: 6069239

End: 6069946

Strand: Reverse

Name: ucpA [C]

Synonym: Tery_3927

Alternate gene names: 113477370

Gene position: 6069946-6069239 (Counterclockwise)

Preceding gene: 113477371

Following gene: 113477369

Centisome position: 78.32

GC content: 38.7

Gene sequence:

>708_bases
ATGAAGAACAAAGTTGTGGTCATAGTCGGTGCCACTGGAGGTATAGGTTCAGCAGTGGCACAAAAACTGGCCAATTCTGG
CGCCAATTTAGTTTTGGTCGCTCAAGATAAGAACAAATTAGATACTTTAGCAACCCAACTATCTACCACCGAAACTATTA
CTATACCAACAAACATCACCAACCCACAGGAAGTAGAAGCTTTAATGGAAAAGGCTTCCCAGCATTTTGGTAAAATAGAT
ATCTTGGTCAATGCAGCAGGAGCAGGTATTCTCAAGCAATGGAACAAAATTGAACCTGCTGACCTTGACATTATGCTTGA
CCTGAATTTGAAAGGCAGTTTTTATACTTGTCAAGCTGCTGCCAATATTATGAAAGGACAAAAATCAGGCCATATTTGTA
ACGTTATTGGAATTCTTGGCAAACATTCAATGGCAATGGGAAGCGTTTATTGTGCTTCTAAATTTGGTTTGGTAGGATTA
AGCAAATGTATGGCAGATGAATTACGGCGTTATGGTATTAAAGTAACTCTTTTCTATTTCGGAGGAGTAAATACGCCTTT
TTGGGATAATGTTAGTCTGAAAGTCGATCGCTCAAAAATGCTGAGTTCAGAAACTGCTGCTGATGCAATTATGTTTGCTC
TCAATGCAGAACCCCAAGCAGTACCCATGGAAATTAATATTCAACCAGATAGTCACTTATTTTTCTAA

Upstream 100 bases:

>100_bases
AATGACCAACACCATATTTTACTTCTATCGGACCCTCTATTCCTTCTGAAGAAGTGCTATATGATAAAGAAGAATGTAAA
TAAAAGTAAAGAAAAAGTCA

Downstream 100 bases:

>100_bases
AAGTTGAATATTTTTCAATGGTTATTTTCGATCAGTTAAGACAAATAATTTTATCTTTATCTGCTTTTCTTTCTCAGTTC
TGGTCTTACTTTTTGTCAAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKNKVVVIVGATGGIGSAVAQKLANSGANLVLVAQDKNKLDTLATQLSTTETITIPTNITNPQEVEALMEKASQHFGKID
ILVNAAGAGILKQWNKIEPADLDIMLDLNLKGSFYTCQAAANIMKGQKSGHICNVIGILGKHSMAMGSVYCASKFGLVGL
SKCMADELRRYGIKVTLFYFGGVNTPFWDNVSLKVDRSKMLSSETAADAIMFALNAEPQAVPMEINIQPDSHLFF

Sequences:

>Translated_235_residues
MKNKVVVIVGATGGIGSAVAQKLANSGANLVLVAQDKNKLDTLATQLSTTETITIPTNITNPQEVEALMEKASQHFGKID
ILVNAAGAGILKQWNKIEPADLDIMLDLNLKGSFYTCQAAANIMKGQKSGHICNVIGILGKHSMAMGSVYCASKFGLVGL
SKCMADELRRYGIKVTLFYFGGVNTPFWDNVSLKVDRSKMLSSETAADAIMFALNAEPQAVPMEINIQPDSHLFF
>Mature_235_residues
MKNKVVVIVGATGGIGSAVAQKLANSGANLVLVAQDKNKLDTLATQLSTTETITIPTNITNPQEVEALMEKASQHFGKID
ILVNAAGAGILKQWNKIEPADLDIMLDLNLKGSFYTCQAAANIMKGQKSGHICNVIGILGKHSMAMGSVYCASKFGLVGL
SKCMADELRRYGIKVTLFYFGGVNTPFWDNVSLKVDRSKMLSSETAADAIMFALNAEPQAVPMEINIQPDSHLFF

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4503817, Length=209, Percent_Identity=25.8373205741627, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=30.1020408163265, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI19923817, Length=182, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=31.3131313131313, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI223718074, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI4758504, Length=207, Percent_Identity=28.5024154589372, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254986, Length=175, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=186, Percent_Identity=31.1827956989247, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=26.9058295964126, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=32.5443786982249, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4504505, Length=182, Percent_Identity=31.3186813186813, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI15277342, Length=206, Percent_Identity=27.1844660194175, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI83715985, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=25.7142857142857, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI7705925, Length=177, Percent_Identity=29.3785310734463, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=173, Percent_Identity=24.8554913294798, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=27.807486631016, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=30.5699481865285, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI210032110, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=27.1739130434783, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=30.2564102564103, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87082160, Length=176, Percent_Identity=32.3863636363636, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=28.804347826087, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789208, Length=182, Percent_Identity=29.6703296703297, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787820, Length=233, Percent_Identity=25.3218884120172, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1790717, Length=177, Percent_Identity=24.8587570621469, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789057, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=27.5510204081633, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=187, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=203, Percent_Identity=25.1231527093596, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=243, Percent_Identity=27.1604938271605, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=185, Percent_Identity=30.8108108108108, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=174, Percent_Identity=28.1609195402299, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=219, Percent_Identity=26.9406392694064, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=207, Percent_Identity=25.6038647342995, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=216, Percent_Identity=27.3148148148148, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=190, Percent_Identity=25.7894736842105, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=213, Percent_Identity=27.6995305164319, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=30.1587301587302, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6320089, Length=220, Percent_Identity=26.8181818181818, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355319, Length=233, Percent_Identity=28.3261802575107, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=27.9166666666667, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=26.9076305220884, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=210, Percent_Identity=28.0952380952381, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=244, Percent_Identity=28.2786885245902, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=31.1224489795918, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=26.9076305220884, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24639444, Length=231, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648693, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355889, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24665247, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI221331216, Length=203, Percent_Identity=29.064039408867, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI221331218, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=26.9035532994924, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663911, Length=249, Percent_Identity=25.7028112449799, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24643142, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=30, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=26.0355029585799, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=179, Percent_Identity=30.7262569832402, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357673, Length=240, Percent_Identity=26.25, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=26.6304347826087, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648944, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=29.8342541436464, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25211; Mature: 25211

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKVVVIVGATGGIGSAVAQKLANSGANLVLVAQDKNKLDTLATQLSTTETITIPTNIT
CCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCC
NPQEVEALMEKASQHFGKIDILVNAAGAGILKQWNKIEPADLDIMLDLNLKGSFYTCQAA
CHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHCCCCCCCCEEEEEEEECCCCEEEHHHH
ANIMKGQKSGHICNVIGILGKHSMAMGSVYCASKFGLVGLSKCMADELRRYGIKVTLFYF
HHHHCCCCCCCEEEEEHHHCCCCHHHHHEEHHHHCCHHHHHHHHHHHHHHCCEEEEEEEE
GGVNTPFWDNVSLKVDRSKMLSSETAADAIMFALNAEPQAVPMEINIQPDSHLFF
CCCCCCCCCCEEEEECHHHHHCCHHHHCEEEEEECCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKNKVVVIVGATGGIGSAVAQKLANSGANLVLVAQDKNKLDTLATQLSTTETITIPTNIT
CCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCC
NPQEVEALMEKASQHFGKIDILVNAAGAGILKQWNKIEPADLDIMLDLNLKGSFYTCQAA
CHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHCCCCCCCCEEEEEEEECCCCEEEHHHH
ANIMKGQKSGHICNVIGILGKHSMAMGSVYCASKFGLVGLSKCMADELRRYGIKVTLFYF
HHHHCCCCCCCEEEEEHHHCCCCHHHHHEEHHHHCCHHHHHHHHHHHHHHCCEEEEEEEE
GGVNTPFWDNVSLKVDRSKMLSSETAADAIMFALNAEPQAVPMEINIQPDSHLFF
CCCCCCCCCCEEEEECHHHHHCCHHHHCEEEEEECCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]