Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477371

Identifier: 113477371

GI number: 113477371

Start: 6070522

End: 6071931

Strand: Reverse

Name: 113477371

Synonym: Tery_3928

Alternate gene names: NA

Gene position: 6071931-6070522 (Counterclockwise)

Preceding gene: 113477372

Following gene: 113477370

Centisome position: 78.35

GC content: 30.85

Gene sequence:

>1410_bases
ATGTCACATAATTCTGGTTTACTAGTGACTAATAATTCTACTGCTATTAGCGCTATCAGCCGCTATATTTACCAAACTAT
TGTTTCTATTCAAAAGCAACATCCAGAGTTGATAACCTCAAAGTATAGGAGTATTCCTTGGCAGGATCCCAAGTATCAGT
CTACTTTAACTAATAAATTTAGAAAAGGGCTTTCTCATGTTAAAAGTAAAGATGTTTTAAAGCTAAAAGTAAAAAATTAT
CTCCAAATCATCTTCACTCCAGAATTTATTAACTCTGCTCAATATGATGTTTTAATTTCTGAAATAGACAAACATATTTA
TTCAGAAATAACCCTAGTTTCATCAGATAAAATTACCAATTATAAAGCATCTAATTTCTCTACAAATGGCACTAAATTAG
TAGAGTCAGGAATTGCTATTTTACTATTAGATGTAGAAAATTTACCACTTGATTTGGAAGCAGAAAAAATTCTTGTAGAT
ATCTGCAATTATCCAATTCAAATTAAAGTTGCTTTTGCCAACTGGCACAGTATGGGTAAAAAAGATGAAGAATTTCATCA
ACGTGGTTATCAACTAATTCATGTTCCTCGTGGAAAAGATAGTGCTGACTTAAAAATGGCAACGGTAGGTGCTTCTATTT
TTCTCAATTATCCCAAAGCTAAGGAGATTTTAGTTTGTTCTTCTGACCGAGGATTAACTCATCTTGGTACTACTTTACAA
TCTCATGGGTTAACTGTGTATCAGGTGCGAAAATATAAAAATCAAATTACAGTTTTAAATAGTAAAACTGGAGAATCAAA
AATATATGCTTTGTCGGAACCAGAAATTCCTAGTATTAATAAATTTATTATTCAATTGCAGGAATTAATTAGAACAGAAG
CAGTAAAAATTGGACAGCAATGGATTAAATTCTCCAGAATTTCTGCTTTGTATAAGGAAACTTATAAGTTAAATCTTAAA
GATGTAGTTCAAACCTACTTTCCTAGTCAAAATTCAAATCATATATTTATCAACTATCCAGTTTATTTTGCACTTCATAA
GCCATCAGAAAAATCTCAAACTTATGTAAGTATTTTTAACCAATTTAAACCCGAAAAAAAAAAAAATCATCCTCCTCTAA
ATAAGGTAGAAAACAACACTACAGTCACAAATATTTCTCAGATTACTTCTCAGGAAGATATCGAAAAAGTATTAGTTAAA
ATTTTGAGCAACTTAACTGCTGAATCTCCAGGAAGTTATATTCCTATTTCTAATCTGGGCAGTGAGTTTTATCGGTTATA
TGGTCAACCAATTACAACAGCTATTAAGCAGTTTCAACCAAGTAAAAAGTTTCCTAAGTTTTTGGAGTTATGTAGTGCTC
TGCAGTTGTATCAATCTCAAGAAGGTCGTTGGTTTGTCAGCTTAAGTTAA

Upstream 100 bases:

>100_bases
AATATCAAAAAATAGCCTAATGTCATCTTGATCTTGTATTATTAAAATATATATTTCTCAAGACGTTTTATTCAAGCCTA
TATAAATTAGGCAATAGGCC

Downstream 100 bases:

>100_bases
AAATCAAAAGTTAAAAAGTTTTTCCTCTCCACAAATGAATCTAAAAGTTGACATCTAATTGATTTTTTGTAAAAATACAG
CGGATTTCAGATTATAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNY
LQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVD
ICNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ
SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLK
DVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVK
ILSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS

Sequences:

>Translated_469_residues
MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNY
LQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVD
ICNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ
SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLK
DVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVK
ILSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS
>Mature_468_residues
SHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNYL
QIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDI
CNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQS
HGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLKD
VVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKI
LSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53522; Mature: 53391

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKF
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHH
RKGLSHVKSKDVLKLKVKNYLQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITN
HHHHHHHCCCCCEEEECCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCC
YKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDICNYPIQIKVAFANWHSMGK
EECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHCCC
KDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ
CCHHHHHCCCEEEEECCCCCCCCEEEEEECEEEEEECCCCCEEEEECCCCCCHHHHHHHH
SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQ
HCCCEEEEEHHHCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WIKFSRISALYKETYKLNLKDVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFN
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHH
QFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKILSNLTAESPGSYIPISNLG
HHCCCHHCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
SEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS
HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
SHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKF
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHH
RKGLSHVKSKDVLKLKVKNYLQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITN
HHHHHHHCCCCCEEEECCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCC
YKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDICNYPIQIKVAFANWHSMGK
EECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHCCC
KDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ
CCHHHHHCCCEEEEECCCCCCCCEEEEEECEEEEEECCCCCEEEEECCCCCCHHHHHHHH
SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQ
HCCCEEEEEHHHCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
WIKFSRISALYKETYKLNLKDVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFN
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHH
QFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKILSNLTAESPGSYIPISNLG
HHCCCHHCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
SEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS
HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA