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The map label for this gene is ndhC

Identifier: 113477003

GI number: 113477003

Start: 5401990

End: 5402397

Strand: Reverse

Name: ndhC

Synonym: Tery_3501

Alternate gene names: 113477003

Gene position: 5402397-5401990 (Counterclockwise)

Preceding gene: 113477017

Following gene: 113477002

Centisome position: 69.71

GC content: 38.97

Gene sequence:

>408_bases
ATGTTCAACAGAGAGTCATATTTATTGAGGAAATATAGATTAATTGTGTTTTTTCTTAGTGGTTACGAGTATTTTCTAGG
CTTTCTAATGATTAGTAGTCTAGTACCAATCATTGCCTTAACTGCATCTAAGCTACTGCGGCCAAAAACTCGTGGCCCAG
AGCGAAGAACTACTTATGAATCAGGGGTAGAACCAATTGGTGGAGCTTGGATACAGTTCAATATCCGTTATTATATGTTT
GCCCTTGTATTTGTCATCTTTGATGTAGAGACAGTATTTCTATATCCCTGGGCAGTGGCCTTTCATCAGTTGGGACTGTT
AGCCTTTATAGAAGCACTGATTTTCATCGCAATCTTAGTGGTTGCTCTAGTATACGCATGGCGCAAAGGAGCTTTAGAAT
GGTCTTAA

Upstream 100 bases:

>100_bases
ACTAATAAATAGCTATTGCTTTTGACTTGTTAATTTTGACTTGTGACTTATACTTAGATTGACATTAGAATAACTTTTAT
GGTCTCTTGTGGTCTCTATA

Downstream 100 bases:

>100_bases
GTCCTAATCAAAACCAAAAAATTATTAATCCTATTGAGGAATCTCCGACAGTTACTCAAGAACTTTCAGAGAATATAGTT
TTAACTACAGTTGACGATCT

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MFNRESYLLRKYRLIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYESGVEPIGGAWIQFNIRYYMF
ALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKGALEWS

Sequences:

>Translated_135_residues
MFNRESYLLRKYRLIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYESGVEPIGGAWIQFNIRYYMF
ALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKGALEWS
>Mature_135_residues
MFNRESYLLRKYRLIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYESGVEPIGGAWIQFNIRYYMF
ALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILVVALVYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=108, Percent_Identity=34.2592592592593, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_TRIEI (Q10YT3)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723064.1
- STRING:   Q10YT3
- GeneID:   4244326
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_3501
- NMPDR:   fig|203124.1.peg.1654
- eggNOG:   COG0838
- HOGENOM:   HBG605540
- OMA:   GERELTY
- PhylomeDB:   Q10YT3
- ProtClustDB:   PRK06602
- BioCyc:   TERY203124:TERY_3501-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 15735; Mature: 15735

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x19ff54dc)-; HASH(0x19ca07a4)-; HASH(0x19c8ddb0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRESYLLRKYRLIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
SGVEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILV
CCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALVYAWRKGALEWS
HHHHHHHHHCCCCCH
>Mature Secondary Structure
MFNRESYLLRKYRLIVFFLSGYEYFLGFLMISSLVPIIALTASKLLRPKTRGPERRTTYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
SGVEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFHQLGLLAFIEALIFIAILV
CCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALVYAWRKGALEWS
HHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA