Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113477017
Identifier: 113477017
GI number: 113477017
Start: 5419224
End: 5419640
Strand: Reverse
Name: 113477017
Synonym: Tery_3515
Alternate gene names: NA
Gene position: 5419640-5419224 (Counterclockwise)
Preceding gene: 113477018
Following gene: 113477003
Centisome position: 69.93
GC content: 29.02
Gene sequence:
>417_bases TTGGCAACAGGTGAATGGGAAAATATTAATCCTTTGATTGTATCTCTATTCAATATTATAGGAATATGGTCTCTAATTTA TAGTTGTTTGTTATTATCTGATGGTAGAGGACAAAAAGTACCAGCATGGTTATTTTCTACATTATCATTTGGAGTCGGAG AATTTGCTATTTTACCCTATTTAGGATTGCGTCAACCTAATTCAATTTTTTCTGGTAAAAAGAATTTATTTTTGAATATC TTAGACTCTCTAATTTTAGGAATTGCTTTAGGGTTAGGTACGATTTTTTTACTAATATACAGTTTTAAAAGTGGTGAATG GGCAGATTTTATTCGACAGTGGCAAAGTAGTAGATTTATTCATGTAATGAGTTTAGATTTTTGTATGTTGTGCTTATTAT TTCTAACTATTTTATGA
Upstream 100 bases:
>100_bases AAATAAAATAGCATTTTGGTTACTTTGGATAGGTTTTAGTCTTTATGCTTTTCTTCTTGCACTCCCTATTCAACCGGATA CTTTAGAATTAATCTAAAAA
Downstream 100 bases:
>100_bases GCAGATTTTATTCGACAGTGGCAAAGTAGTAGATTTATTCATGTAATGAGTTTAGATTTTTGTATGTTGTGCTTATTATT TCTAACTATTTTAGAGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MATGEWENINPLIVSLFNIIGIWSLIYSCLLLSDGRGQKVPAWLFSTLSFGVGEFAILPYLGLRQPNSIFSGKKNLFLNI LDSLILGIALGLGTIFLLIYSFKSGEWADFIRQWQSSRFIHVMSLDFCMLCLLFLTIL
Sequences:
>Translated_138_residues MATGEWENINPLIVSLFNIIGIWSLIYSCLLLSDGRGQKVPAWLFSTLSFGVGEFAILPYLGLRQPNSIFSGKKNLFLNI LDSLILGIALGLGTIFLLIYSFKSGEWADFIRQWQSSRFIHVMSLDFCMLCLLFLTIL >Mature_137_residues ATGEWENINPLIVSLFNIIGIWSLIYSCLLLSDGRGQKVPAWLFSTLSFGVGEFAILPYLGLRQPNSIFSGKKNLFLNIL DSLILGIALGLGTIFLLIYSFKSGEWADFIRQWQSSRFIHVMSLDFCMLCLLFLTIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15558; Mature: 15427
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGEWENINPLIVSLFNIIGIWSLIYSCLLLSDGRGQKVPAWLFSTLSFGVGEFAILPY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH LGLRQPNSIFSGKKNLFLNILDSLILGIALGLGTIFLLIYSFKSGEWADFIRQWQSSRFI HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE HVMSLDFCMLCLLFLTIL HHHHHHHHHHHHHHHHHC >Mature Secondary Structure ATGEWENINPLIVSLFNIIGIWSLIYSCLLLSDGRGQKVPAWLFSTLSFGVGEFAILPY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH LGLRQPNSIFSGKKNLFLNILDSLILGIALGLGTIFLLIYSFKSGEWADFIRQWQSSRFI HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE HVMSLDFCMLCLLFLTIL HHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA