Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476960
Identifier: 113476960
GI number: 113476960
Start: 5281815
End: 5282210
Strand: Reverse
Name: 113476960
Synonym: Tery_3456
Alternate gene names: NA
Gene position: 5282210-5281815 (Counterclockwise)
Preceding gene: 113476962
Following gene: 113476958
Centisome position: 68.16
GC content: 30.56
Gene sequence:
>396_bases ATGTTTGACTTTAATAACATCATCGAATTTTCACACCTATATTGTGTAGAAATTTGTGGATTTATAGTACCTACAAATGT ACTAGCAAGTTTACAACCAATAATTTTTACAGTCCTCCATCGACCCAAAAAAGAAATTAACTTAATGGCATTAGTAGCCA GTTTTTATGCCTTAATAATTATCCTCCATGTCGGAAGCTGGTTTATTGTTGGAGTAGTTAGAATCCAAACATTTATTCTT TTGGGGTTTGCTACCTGTTGTTTAATAACAAATATTTGGGCAGTAACTCATAATTCTAGCATGAGAGAAACCATTAAATT TTTACAAAAATTGATAGTTAAACTTATTAAACGTATAACTATCCATAGTCAAGATATGCTCCCAGAAACAAAATAG
Upstream 100 bases:
>100_bases TTTTGATAACATTCAACTGAAAAACCAATGTGATATTACCCTCAAATAAAACCCCAGAATTAATCAACCATAAACAGAAA TTTATCAACAGAATTATAAT
Downstream 100 bases:
>100_bases AATTGTCGTCAAGAGAGAGGAGAATAGTGTAGAGATTAGCCTAAATTTTTTTAGCAAAACACAAATAATTAAAATCCCTA CACTAAACTCTTCATCTATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 131
Protein sequence:
>131_residues MFDFNNIIEFSHLYCVEICGFIVPTNVLASLQPIIFTVLHRPKKEINLMALVASFYALIIILHVGSWFIVGVVRIQTFIL LGFATCCLITNIWAVTHNSSMRETIKFLQKLIVKLIKRITIHSQDMLPETK
Sequences:
>Translated_131_residues MFDFNNIIEFSHLYCVEICGFIVPTNVLASLQPIIFTVLHRPKKEINLMALVASFYALIIILHVGSWFIVGVVRIQTFIL LGFATCCLITNIWAVTHNSSMRETIKFLQKLIVKLIKRITIHSQDMLPETK >Mature_131_residues MFDFNNIIEFSHLYCVEICGFIVPTNVLASLQPIIFTVLHRPKKEINLMALVASFYALIIILHVGSWFIVGVVRIQTFIL LGFATCCLITNIWAVTHNSSMRETIKFLQKLIVKLIKRITIHSQDMLPETK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15020; Mature: 15020
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDFNNIIEFSHLYCVEICGFIVPTNVLASLQPIIFTVLHRPKKEINLMALVASFYALII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ILHVGSWFIVGVVRIQTFILLGFATCCLITNIWAVTHNSSMRETIKFLQKLIVKLIKRIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH IHSQDMLPETK HCCCCCCCCCC >Mature Secondary Structure MFDFNNIIEFSHLYCVEICGFIVPTNVLASLQPIIFTVLHRPKKEINLMALVASFYALII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ILHVGSWFIVGVVRIQTFILLGFATCCLITNIWAVTHNSSMRETIKFLQKLIVKLIKRIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH IHSQDMLPETK HCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA