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The map label for this gene is yfjD [C]

Identifier: 113476958

GI number: 113476958

Start: 5279739

End: 5280767

Strand: Reverse

Name: yfjD [C]

Synonym: Tery_3454

Alternate gene names: 113476958

Gene position: 5280767-5279739 (Counterclockwise)

Preceding gene: 113476960

Following gene: 113476957

Centisome position: 68.14

GC content: 31.29

Gene sequence:

>1029_bases
ATGCTCAAGCTAATTATTATAGTTTTAATTATTCTTATAGGTTCTGCCCTTTGTTCTGCTACTGAAACAGCTTTACTTTC
TGTTTCTCCTATTAAAGTACAGCAGTTAGCCCAATCTAAAAAAACAGCAGCATTAGCACTGTGGGTAATTAAGAAAAAAA
TTAACCGCCCTATTGCCACTGTTGTGATTATTAATAACATTTTTAATATTGTTGGTAGTATCTTAATTGGTAATATTGCA
GCCTCAGTTTTTGGAAGTACTTGGTTAGGATTTTTTTCAGCTATTTTGACATTTTTAGTAATAGTTTTTGGCGAAATTAT
TCCTAAAACTTTAGGAGAACGCTATGCCATGAAATTTTCATTAATAATCGCTTTACCTGTAAAAGGTTTAACTTTTATTT
TTACTCCCATAGTTTGGTTCATGGAAAAAATTACATCACCTTTTACTCAAGGAAAAAAATTACCTACTACTAATGAAGCA
GAAATAATGTTTTTGACCAGAATAGGATATAAAGAGGGAGTTATTGAAGGTGATGAAGCTGAAATGATTGGAAGAGTATT
TCGGCTAAATGATAAAAGTGCATGGGATATTATGACACCTCGAATAGCGACTACTTATTTATACAGTGACTCAATTATAG
CTGAGGTAAAATCAGATATTATTAGTTCTCAACATAGTCGAATTATTGTCATAAGAGATTCTATTGATGATGTAGTTGGC
ATGGTTTTAAAAAATGAATTACTTAAAGGCATAATTGAAGGAAAGGAGAATCAAAAAGTTGCTGACTTTATGCGAGATAT
TAGATTTATTCCAGATACACTGAGAGTAGATTTCTTATTAAAAGAATTTCAGAAATATAGTCAACAGTTGATGGTTGTTT
TAGATGAATATGGAGGAGTTTCAGGAGTGGTGAGCCTAGAAGATGTATTAGAAGAATTAACTGGTGAAATTGTGGATGAA
ACAGATCAAAGTGTTGACTTACAAATTGTGGCAAGAATGAGAAGAAAGATCAAATTAAAGGATAAGTAA

Upstream 100 bases:

>100_bases
TAAAACACCAATAGTGAGAACTAATATAATCAACCAGTTAGAAGGTTTCATAACTAAATAAAAAATGGTATTATTAAGAT
TACCCAATTATTAGTTGAGT

Downstream 100 bases:

>100_bases
TTTCAGTTATTAGTTATCAATTTATCACTATCTACCAGTTTAGTCAGAGCCCTAAAAAAAAACGTAGAAATATTCCTACA
TAAGTGATAGAAAATGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MLKLIIIVLIILIGSALCSATETALLSVSPIKVQQLAQSKKTAALALWVIKKKINRPIATVVIINNIFNIVGSILIGNIA
ASVFGSTWLGFFSAILTFLVIVFGEIIPKTLGERYAMKFSLIIALPVKGLTFIFTPIVWFMEKITSPFTQGKKLPTTNEA
EIMFLTRIGYKEGVIEGDEAEMIGRVFRLNDKSAWDIMTPRIATTYLYSDSIIAEVKSDIISSQHSRIIVIRDSIDDVVG
MVLKNELLKGIIEGKENQKVADFMRDIRFIPDTLRVDFLLKEFQKYSQQLMVVLDEYGGVSGVVSLEDVLEELTGEIVDE
TDQSVDLQIVARMRRKIKLKDK

Sequences:

>Translated_342_residues
MLKLIIIVLIILIGSALCSATETALLSVSPIKVQQLAQSKKTAALALWVIKKKINRPIATVVIINNIFNIVGSILIGNIA
ASVFGSTWLGFFSAILTFLVIVFGEIIPKTLGERYAMKFSLIIALPVKGLTFIFTPIVWFMEKITSPFTQGKKLPTTNEA
EIMFLTRIGYKEGVIEGDEAEMIGRVFRLNDKSAWDIMTPRIATTYLYSDSIIAEVKSDIISSQHSRIIVIRDSIDDVVG
MVLKNELLKGIIEGKENQKVADFMRDIRFIPDTLRVDFLLKEFQKYSQQLMVVLDEYGGVSGVVSLEDVLEELTGEIVDE
TDQSVDLQIVARMRRKIKLKDK
>Mature_342_residues
MLKLIIIVLIILIGSALCSATETALLSVSPIKVQQLAQSKKTAALALWVIKKKINRPIATVVIINNIFNIVGSILIGNIA
ASVFGSTWLGFFSAILTFLVIVFGEIIPKTLGERYAMKFSLIIALPVKGLTFIFTPIVWFMEKITSPFTQGKKLPTTNEA
EIMFLTRIGYKEGVIEGDEAEMIGRVFRLNDKSAWDIMTPRIATTYLYSDSIIAEVKSDIISSQHSRIIVIRDSIDDVVG
MVLKNELLKGIIEGKENQKVADFMRDIRFIPDTLRVDFLLKEFQKYSQQLMVVLDEYGGVSGVVSLEDVLEELTGEIVDE
TDQSVDLQIVARMRRKIKLKDK

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=341, Percent_Identity=24.9266862170088, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI94681046, Length=347, Percent_Identity=24.7838616714697, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI40068055, Length=358, Percent_Identity=21.7877094972067, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40068053, Length=358, Percent_Identity=21.7877094972067, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI145693175, Length=311, Percent_Identity=26.3665594855305, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790664, Length=356, Percent_Identity=27.5280898876405, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786879, Length=158, Percent_Identity=32.9113924050633, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082033, Length=163, Percent_Identity=29.4478527607362, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788119, Length=155, Percent_Identity=31.6129032258064, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569263, Length=376, Percent_Identity=24.468085106383, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 38250; Mature: 38250

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLIIIVLIILIGSALCSATETALLSVSPIKVQQLAQSKKTAALALWVIKKKINRPIAT
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VVIINNIFNIVGSILIGNIAASVFGSTWLGFFSAILTFLVIVFGEIIPKTLGERYAMKFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIALPVKGLTFIFTPIVWFMEKITSPFTQGKKLPTTNEAEIMFLTRIGYKEGVIEGDEA
EEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
EMIGRVFRLNDKSAWDIMTPRIATTYLYSDSIIAEVKSDIISSQHSRIIVIRDSIDDVVG
HHHHHHHHCCCCCCCCCCCCHHHHHHEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
MVLKNELLKGIIEGKENQKVADFMRDIRFIPDTLRVDFLLKEFQKYSQQLMVVLDEYGGV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGVVSLEDVLEELTGEIVDETDQSVDLQIVARMRRKIKLKDK
CCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLKLIIIVLIILIGSALCSATETALLSVSPIKVQQLAQSKKTAALALWVIKKKINRPIAT
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VVIINNIFNIVGSILIGNIAASVFGSTWLGFFSAILTFLVIVFGEIIPKTLGERYAMKFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIIALPVKGLTFIFTPIVWFMEKITSPFTQGKKLPTTNEAEIMFLTRIGYKEGVIEGDEA
EEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
EMIGRVFRLNDKSAWDIMTPRIATTYLYSDSIIAEVKSDIISSQHSRIIVIRDSIDDVVG
HHHHHHHHCCCCCCCCCCCCHHHHHHEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
MVLKNELLKGIIEGKENQKVADFMRDIRFIPDTLRVDFLLKEFQKYSQQLMVVLDEYGGV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SGVVSLEDVLEELTGEIVDETDQSVDLQIVARMRRKIKLKDK
CCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]