Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476622
Identifier: 113476622
GI number: 113476622
Start: 4724659
End: 4726017
Strand: Reverse
Name: 113476622
Synonym: Tery_3066
Alternate gene names: NA
Gene position: 4726017-4724659 (Counterclockwise)
Preceding gene: 113476623
Following gene: 113476621
Centisome position: 60.98
GC content: 37.6
Gene sequence:
>1359_bases ATGAAAGATAAAATTGATTCTATTATCAATGGTCTAATTCCTGAAACAACTAGAAACATATCAGCAGTAGTAGAAGCTGT TCAAGACGGAGCTGCAAAAATACTAGAACCAGGTTCAGGCCTAATTAACAGCTATAATCATCAAGTTACTGAAAATCCAC AAGCATTTGGTTTTGCCTTTGAACATTTACAAACAATTGGTTTCAATATTAGAGCTTCACTACAAGGCTTTGAAACTCGT GCTTATCAAATCCCCGCAGATGGAACTAAGTATGCCCCTGATATTTATGTTGAAAAAGTAGGAAAGGTTATAGAAGAAAT TCAAGCTAAAGTAGGTACCTCTGAATATGTAGAAAAACAAGTTAATTCTGGACACTACAAAAGTGATATACTTACTAATT CAGAAAATCCTAGTTTATATGGAACAAAAACTATAATTAACGTAGATGGGATAAAAAGTTTTCCTATTAGTAAAGGCTTT GCTGTTTGGGTTGCTGAAAATCCATATTTAGCTGCTAACTTAATGGAAGGTGCTGCACTAGTAGGAGAAGTAGGAGGAGC TGGCATTACAGGTGCGTCAATTAACACTACTATTAATATTTTGCTCCGGTCTATCAAAACTATTGCAGCTTATTGTAGAG GAGAGCAAGCGCTTGATAAAGCTGAACTGGAAAAATTCCTTGAAGTAGCTATAAATGGTTTAAAAAGTGGTTTTATTCGA GGTACTGCTATCAAAGTTATTCAAAGGTTAATGGGAGGAAATGCTTTTGCAGCTTTGGGCTTTACGTTGGCAGAATCAGT TATTCCTGTTCTGATTCAAGTTTTACAGGATAAAATGACTCTTGAAGAAGCGATTAATCAGGTAGGACTAAAAGCATTCA CTTCAGGTATAATCACAACTGTTGTAATTATATATCCACCATTAGGAGCAGTTTTATTAAGTGCTTCAGTTATTCAAGCA GTTTGGGTGGAAATTTCCCCAGAATGGCAAAAATTTATTATTCAAAAAGCAATACCAACAGCAGCAATGGTTACCGGAGG TGCAATGGTTTGTGCAGGAGCTTCAGCAGGTACAGTAGTTACTGTTGCATCTACTTTAGGGGCAGCAGCTTCCACAGGGA CGGCGATTGGTTCTTTAAGTGGAGCAGCAGCTACAAATGCTGCGTTAGCTTGGTTAGGAGGTGGCACATTAGCTGCAGGT GGTGGTGGAGTAGTTGCTGGAGCTGCTATTGTTTCTGCTATTTCTACAGGTGGTGCAGTTGTTGCTATTGCAGGTATTGG TCTTATTGGGAAACAGATTTGGGATTATCAAAAAAATACAGACAGAAAGGTAAGCAGCACAAAGTCTATTATTTCTTAA
Upstream 100 bases:
>100_bases AATATAAAAAAAATATCGGAATTCAGTAAATATTCTGTTGTTTGCAAACAATTATGTGTTTTATAATAACAAGAAAAGCT CTCTATTTTCTAAAATTATA
Downstream 100 bases:
>100_bases AATTCTTTATCTTGCAATTGACTGTTTAAGGTTATTTGACCTTGGGCAAAAATGTCTAAAATATTAATTCCAAAAATAAT CATTGTAATTTGTAAAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MKDKIDSIINGLIPETTRNISAVVEAVQDGAAKILEPGSGLINSYNHQVTENPQAFGFAFEHLQTIGFNIRASLQGFETR AYQIPADGTKYAPDIYVEKVGKVIEEIQAKVGTSEYVEKQVNSGHYKSDILTNSENPSLYGTKTIINVDGIKSFPISKGF AVWVAENPYLAANLMEGAALVGEVGGAGITGASINTTINILLRSIKTIAAYCRGEQALDKAELEKFLEVAINGLKSGFIR GTAIKVIQRLMGGNAFAALGFTLAESVIPVLIQVLQDKMTLEEAINQVGLKAFTSGIITTVVIIYPPLGAVLLSASVIQA VWVEISPEWQKFIIQKAIPTAAMVTGGAMVCAGASAGTVVTVASTLGAAASTGTAIGSLSGAAATNAALAWLGGGTLAAG GGGVVAGAAIVSAISTGGAVVAIAGIGLIGKQIWDYQKNTDRKVSSTKSIIS
Sequences:
>Translated_452_residues MKDKIDSIINGLIPETTRNISAVVEAVQDGAAKILEPGSGLINSYNHQVTENPQAFGFAFEHLQTIGFNIRASLQGFETR AYQIPADGTKYAPDIYVEKVGKVIEEIQAKVGTSEYVEKQVNSGHYKSDILTNSENPSLYGTKTIINVDGIKSFPISKGF AVWVAENPYLAANLMEGAALVGEVGGAGITGASINTTINILLRSIKTIAAYCRGEQALDKAELEKFLEVAINGLKSGFIR GTAIKVIQRLMGGNAFAALGFTLAESVIPVLIQVLQDKMTLEEAINQVGLKAFTSGIITTVVIIYPPLGAVLLSASVIQA VWVEISPEWQKFIIQKAIPTAAMVTGGAMVCAGASAGTVVTVASTLGAAASTGTAIGSLSGAAATNAALAWLGGGTLAAG GGGVVAGAAIVSAISTGGAVVAIAGIGLIGKQIWDYQKNTDRKVSSTKSIIS >Mature_452_residues MKDKIDSIINGLIPETTRNISAVVEAVQDGAAKILEPGSGLINSYNHQVTENPQAFGFAFEHLQTIGFNIRASLQGFETR AYQIPADGTKYAPDIYVEKVGKVIEEIQAKVGTSEYVEKQVNSGHYKSDILTNSENPSLYGTKTIINVDGIKSFPISKGF AVWVAENPYLAANLMEGAALVGEVGGAGITGASINTTINILLRSIKTIAAYCRGEQALDKAELEKFLEVAINGLKSGFIR GTAIKVIQRLMGGNAFAALGFTLAESVIPVLIQVLQDKMTLEEAINQVGLKAFTSGIITTVVIIYPPLGAVLLSASVIQA VWVEISPEWQKFIIQKAIPTAAMVTGGAMVCAGASAGTVVTVASTLGAAASTGTAIGSLSGAAATNAALAWLGGGTLAAG GGGVVAGAAIVSAISTGGAVVAIAGIGLIGKQIWDYQKNTDRKVSSTKSIIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46731; Mature: 46731
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDKIDSIINGLIPETTRNISAVVEAVQDGAAKILEPGSGLINSYNHQVTENPQAFGFAF CCCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHH EHLQTIGFNIRASLQGFETRAYQIPADGTKYAPDIYVEKVGKVIEEIQAKVGTSEYVEKQ HHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH VNSGHYKSDILTNSENPSLYGTKTIINVDGIKSFPISKGFAVWVAENPYLAANLMEGAAL HCCCCCCHHCCCCCCCCCEEECEEEEEECCCCCCCCCCCEEEEEECCCEEEHHHHHHHHH VGEVGGAGITGASINTTINILLRSIKTIAAYCRGEQALDKAELEKFLEVAINGLKSGFIR HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC GTAIKVIQRLMGGNAFAALGFTLAESVIPVLIQVLQDKMTLEEAINQVGLKAFTSGIITT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIIYPPLGAVLLSASVIQAVWVEISPEWQKFIIQKAIPTAAMVTGGAMVCAGASAGTVV HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCEE TVASTLGAAASTGTAIGSLSGAAATNAALAWLGGGTLAAGGGGVVAGAAIVSAISTGGAV EEHHHHCCCCCCCCHHHCCCCCHHHHHHEEEECCCEEECCCCCHHHHHHHHHHHHCCCCE VAIAGIGLIGKQIWDYQKNTDRKVSSTKSIIS EEEHHHHHHHHHHHHCCCCCCCHHHHHHHHCC >Mature Secondary Structure MKDKIDSIINGLIPETTRNISAVVEAVQDGAAKILEPGSGLINSYNHQVTENPQAFGFAF CCCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHH EHLQTIGFNIRASLQGFETRAYQIPADGTKYAPDIYVEKVGKVIEEIQAKVGTSEYVEKQ HHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH VNSGHYKSDILTNSENPSLYGTKTIINVDGIKSFPISKGFAVWVAENPYLAANLMEGAAL HCCCCCCHHCCCCCCCCCEEECEEEEEECCCCCCCCCCCEEEEEECCCEEEHHHHHHHHH VGEVGGAGITGASINTTINILLRSIKTIAAYCRGEQALDKAELEKFLEVAINGLKSGFIR HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC GTAIKVIQRLMGGNAFAALGFTLAESVIPVLIQVLQDKMTLEEAINQVGLKAFTSGIITT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIIYPPLGAVLLSASVIQAVWVEISPEWQKFIIQKAIPTAAMVTGGAMVCAGASAGTVV HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCEE TVASTLGAAASTGTAIGSLSGAAATNAALAWLGGGTLAAGGGGVVAGAAIVSAISTGGAV EEHHHHCCCCCCCCHHHCCCCCHHHHHHEEEECCCEEECCCCCHHHHHHHHHHHHCCCCE VAIAGIGLIGKQIWDYQKNTDRKVSSTKSIIS EEEHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA