Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476621
Identifier: 113476621
GI number: 113476621
Start: 4723643
End: 4724131
Strand: Reverse
Name: 113476621
Synonym: Tery_3065
Alternate gene names: NA
Gene position: 4724131-4723643 (Counterclockwise)
Preceding gene: 113476622
Following gene: 113476616
Centisome position: 60.96
GC content: 41.1
Gene sequence:
>489_bases GTGCAAAAAAAAAGTCTTTATGCCAGTGAGCAAGATACCCCAAGAGTCCAAGAGTTAAGACATGACTATCGACGTTGGTT AGATAAAATTGATGTCAGAAATTTAGTATTTGTTGATGAAGCCCGAATAAATTTGTCAATGTCTCGTTTATTCGCCAGAG CCGTAGATGGGGAACGAGCTGTTGGTAGTATCCCAGGTAGCAAGGGTGGAAATGTTTCTTTGATTGGTGCTTTGAACCTG GATGGACTGATTGCGTCGATGACTGTACCAGGAAGTACAAATACTGAGGTATTTATCACTTTATTAAACCCAGGTCTTAC TACTGATTTATCACCTATTGAGCTTTGTTGGTCGAAACTGAAGCAATTTCTCCGTTCTTGTGAGGCACGTACCCATGAAT CACTGGAGCAAGCAATGGCTGAAGTTGTAAATTTCATTACTGAAGATGATGCCTTCGGTTGGTTCAACCACTGTGGTCTA TTTACCTGA
Upstream 100 bases:
>100_bases ACTTATTGCTGAGAGAATTATGCGCTCGCTATCAAGAAACAACAGGAATTAGGGTGAGTATCTCCACAATGCATCGCGCC GTAGAAAAATTAGGCTTACG
Downstream 100 bases:
>100_bases AAATTGCTGTAAAAACAAAAAAGCCGTTTCGAGATCTGTAGCAGACATCGTTTACGATCGCGCCACCGGAGACTTATATT ACAATGCCAAGGTCGGCTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MQKKSLYASEQDTPRVQELRHDYRRWLDKIDVRNLVFVDEARINLSMSRLFARAVDGERAVGSIPGSKGGNVSLIGALNL DGLIASMTVPGSTNTEVFITLLNPGLTTDLSPIELCWSKLKQFLRSCEARTHESLEQAMAEVVNFITEDDAFGWFNHCGL FT
Sequences:
>Translated_162_residues MQKKSLYASEQDTPRVQELRHDYRRWLDKIDVRNLVFVDEARINLSMSRLFARAVDGERAVGSIPGSKGGNVSLIGALNL DGLIASMTVPGSTNTEVFITLLNPGLTTDLSPIELCWSKLKQFLRSCEARTHESLEQAMAEVVNFITEDDAFGWFNHCGL FT >Mature_162_residues MQKKSLYASEQDTPRVQELRHDYRRWLDKIDVRNLVFVDEARINLSMSRLFARAVDGERAVGSIPGSKGGNVSLIGALNL DGLIASMTVPGSTNTEVFITLLNPGLTTDLSPIELCWSKLKQFLRSCEARTHESLEQAMAEVVNFITEDDAFGWFNHCGL FT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18122; Mature: 18122
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKKSLYASEQDTPRVQELRHDYRRWLDKIDVRNLVFVDEARINLSMSRLFARAVDGERA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC VGSIPGSKGGNVSLIGALNLDGLIASMTVPGSTNTEVFITLLNPGLTTDLSPIELCWSKL CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH KQFLRSCEARTHESLEQAMAEVVNFITEDDAFGWFNHCGLFT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC >Mature Secondary Structure MQKKSLYASEQDTPRVQELRHDYRRWLDKIDVRNLVFVDEARINLSMSRLFARAVDGERA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC VGSIPGSKGGNVSLIGALNLDGLIASMTVPGSTNTEVFITLLNPGLTTDLSPIELCWSKL CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH KQFLRSCEARTHESLEQAMAEVVNFITEDDAFGWFNHCGLFT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA