| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476534
Identifier: 113476534
GI number: 113476534
Start: 4606542
End: 4607075
Strand: Reverse
Name: 113476534
Synonym: Tery_2963
Alternate gene names: NA
Gene position: 4607075-4606542 (Counterclockwise)
Preceding gene: 113476536
Following gene: 113476532
Centisome position: 59.45
GC content: 32.02
Gene sequence:
>534_bases TTGACTGATCAAGAACTCAAAGCAGTCAAGCTCGACCTTTCAACAGTTCACTTTATCCTGACACGTTTAGAACAAGGAAG TTGTAGAACTGATAGACCAGCACTAATAAACGAGTGTAATAGACGGGCACATTTTGAAGAAAAATTACGTAATGTCCTAT ATGCCTGGGATATTAAGGATCAATTAGTTTTTTACTTTTCAGGACATGAAGATATTCGGAAAAATCATTTATATTGTCTA AAAATAGGATTAAAAGATTCTCATTGGTATCCCTTTAATAATTTAATGAATGACGTAAGTGCGGAAGAGTTTCAACGTGC TATTCTTGTTCTCGATACTTGGCATAATAGTGCAATAATTCCAGGAATTAAGAACTCAAATGATAGTATTTCTAATATAA AAGAAAGTATGGAAAATTCCAAAATTCCTAAAGTAATTGCTATGATCACTTCGTCTCAAAAAGCTCAAAAGAGTCATGAA CTATCATATAGATCTTATAGTGTATTCACTGACCTTTTTTGTAATCCTATTTAA
Upstream 100 bases:
>100_bases ATTAAAGTATAGCATTGTTTTTGAGAAATAGTATAACTTTCTCTAAGAGAAGAATAAAGGTAAATGTACTTTACTTTTTT CCAAAAGCCCAGTTAACGCT
Downstream 100 bases:
>100_bases ACGAGTCTGGATGAAAATGGTACAAATTACGGGCATATTTATATTAAACAGATTTTTGAATATATTAATAAAAATTTACA GACAGATAAACAATACTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MTDQELKAVKLDLSTVHFILTRLEQGSCRTDRPALINECNRRAHFEEKLRNVLYAWDIKDQLVFYFSGHEDIRKNHLYCL KIGLKDSHWYPFNNLMNDVSAEEFQRAILVLDTWHNSAIIPGIKNSNDSISNIKESMENSKIPKVIAMITSSQKAQKSHE LSYRSYSVFTDLFCNPI
Sequences:
>Translated_177_residues MTDQELKAVKLDLSTVHFILTRLEQGSCRTDRPALINECNRRAHFEEKLRNVLYAWDIKDQLVFYFSGHEDIRKNHLYCL KIGLKDSHWYPFNNLMNDVSAEEFQRAILVLDTWHNSAIIPGIKNSNDSISNIKESMENSKIPKVIAMITSSQKAQKSHE LSYRSYSVFTDLFCNPI >Mature_176_residues TDQELKAVKLDLSTVHFILTRLEQGSCRTDRPALINECNRRAHFEEKLRNVLYAWDIKDQLVFYFSGHEDIRKNHLYCLK IGLKDSHWYPFNNLMNDVSAEEFQRAILVLDTWHNSAIIPGIKNSNDSISNIKESMENSKIPKVIAMITSSQKAQKSHEL SYRSYSVFTDLFCNPI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20597; Mature: 20465
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQELKAVKLDLSTVHFILTRLEQGSCRTDRPALINECNRRAHFEEKLRNVLYAWDIKD CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHEEEEECCC QLVFYFSGHEDIRKNHLYCLKIGLKDSHWYPFNNLMNDVSAEEFQRAILVLDTWHNSAII EEEEEECCCHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHEEEEEECCCCCEEC PGIKNSNDSISNIKESMENSKIPKVIAMITSSQKAQKSHELSYRSYSVFTDLFCNPI CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCC >Mature Secondary Structure TDQELKAVKLDLSTVHFILTRLEQGSCRTDRPALINECNRRAHFEEKLRNVLYAWDIKD CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHEEEEECCC QLVFYFSGHEDIRKNHLYCLKIGLKDSHWYPFNNLMNDVSAEEFQRAILVLDTWHNSAII EEEEEECCCHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHEEEEEECCCCCEEC PGIKNSNDSISNIKESMENSKIPKVIAMITSSQKAQKSHELSYRSYSVFTDLFCNPI CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA