| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476421
Identifier: 113476421
GI number: 113476421
Start: 4406496
End: 4406747
Strand: Reverse
Name: 113476421
Synonym: Tery_2835
Alternate gene names: NA
Gene position: 4406747-4406496 (Counterclockwise)
Preceding gene: 113476424
Following gene: 113476420
Centisome position: 56.86
GC content: 34.13
Gene sequence:
>252_bases ATGGATACCCAGTTCATTAACATTGGTTTTGGTAATATTGTTTCTGCTAATCGAGTTGTGACAATTGTTAGTCCAGAATC AGCTCCTATTAAGCGGATAATTAATGATGGACGAGAAAGAGGCCAATTAATTGATGCTACTTATGGTCGACGCACTAGAG CTGTAATTATTACAGATTCTAATCATGTTATTCTTTCTTCTATTCAACCTGAGACAGTGGCAAATAGATTTTTATTTAAT AAAGATGACTGA
Upstream 100 bases:
>100_bases AAGCTCTTGAGCTTTGTGAAGTTGGGGAATGTCCCCATGTCGCAATTGCCCATTTATTTTCAGGAAGATTTCATTTCAAT CTATGTCATTATAATCTCTT
Downstream 100 bases:
>100_bases TGGCTAATTTTGAAAGGCATAAGGCTTCAGTACTACCCAGAACTCAGAAGTGAAATTCACAAGAGATAAGAAATTTGAGA ACTTGAGGATATCTTAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 83; Mature: 83
Protein sequence:
>83_residues MDTQFINIGFGNIVSANRVVTIVSPESAPIKRIINDGRERGQLIDATYGRRTRAVIITDSNHVILSSIQPETVANRFLFN KDD
Sequences:
>Translated_83_residues MDTQFINIGFGNIVSANRVVTIVSPESAPIKRIINDGRERGQLIDATYGRRTRAVIITDSNHVILSSIQPETVANRFLFN KDD >Mature_83_residues MDTQFINIGFGNIVSANRVVTIVSPESAPIKRIINDGRERGQLIDATYGRRTRAVIITDSNHVILSSIQPETVANRFLFN KDD
Specific function: Unknown
COG id: COG2052
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0296 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2835_TRIEI (Q110R5)
Other databases:
- EMBL: CP000393 - RefSeq: YP_722482.1 - STRING: Q110R5 - GeneID: 4245138 - GenomeReviews: CP000393_GR - KEGG: ter:Tery_2835 - NMPDR: fig|203124.1.peg.4768 - eggNOG: COG2052 - HOGENOM: HBG286498 - OMA: KRIISDA - ProtClustDB: PRK04323 - BioCyc: TERY203124:TERY_2835-MONOMER - HAMAP: MF_01503 - InterPro: IPR007169 - ProDom: PD063023
Pfam domain/function: PF04025 DUF370
EC number: NA
Molecular weight: Translated: 9258; Mature: 9258
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTQFINIGFGNIVSANRVVTIVSPESAPIKRIINDGRERGQLIDATYGRRTRAVIITDS CCCEEEECCCCCEECCCEEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCEEEEEEECC NHVILSSIQPETVANRFLFNKDD CEEEEEECCCCHHHHHEEEECCC >Mature Secondary Structure MDTQFINIGFGNIVSANRVVTIVSPESAPIKRIINDGRERGQLIDATYGRRTRAVIITDS CCCEEEECCCCCEECCCEEEEEECCCCCCHHHHHHCCCCCCEEEECCCCCCEEEEEEECC NHVILSSIQPETVANRFLFNKDD CEEEEEECCCCHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA