| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476097
Identifier: 113476097
GI number: 113476097
Start: 3808790
End: 3810340
Strand: Reverse
Name: 113476097
Synonym: Tery_2476
Alternate gene names: NA
Gene position: 3810340-3808790 (Counterclockwise)
Preceding gene: 113476098
Following gene: 113476096
Centisome position: 49.16
GC content: 33.27
Gene sequence:
>1551_bases ATGGTGAATTTAAGAAAAAAAATCAACTACCTATTTCGCGAAGCTCAAACTATTATTTTAGAGGAATTACGAGAACCTCT TGACCGAGTTGCTATTAGTTTAATTATTTGTATAACCTTGTTAATTTGCCTGGTACTTGTAGTAGGAGGAAATATAGCTC CAAAAGTTAGAGATTTTAGTTGGCAAGATCAAAAGATAGGTTTTGAAGATACGGCTTTTATACTAAATTTTAATCGGCCT ATGAACCATGCTAGTGTTGAGAAACATTTACAAATTGAGCCGCCTTTACCAGGAAAGGTAAGTTGGGCAGGTCGGAGAAT GGCTTATACTGTTTTAAGTTCTGTTCCCTATGGTAATAAATATACTTTAAAATTATCTGGGGCGAAAGAAAAGTTTTATG GGTTAGATAAGGGAGAGGTAATGGAACCTTTTGAAGGTTCGTTTCAAAGTCGCGATCGCGCATTTGCTTATATAGGTATT GAAGGGAAAGAAAAAGGTAGGTTAGTTTTAGTTAATTTAACTGAACAGCAACAGGGAATATTCCTAACTCCTGAAAATCT AGAAGTGTTAGATTTTAAGTTTTTTCCAGAGGGAAAAAAGGTTGTGTTTTCAGCAGTTGAAAAGTTCAATGGTGTCCCAA GTTCTTTGGAACAAAAAATATATACTGTCACAACTGGTGTTAATGATCAATATTCAATAGAAAAATCAGAATCTTCAGAA AAAGTGGTAGGTAAAATTGAAAAACTTCTGGATAATTCAGAGTACCAAAATTTGAAATTTGACTTATCTCTTGATGGTAA AATAATTGTAATTCAACGAGTAAATAGAAAAGATGTATTTGATGCTGGTCCTTGGGTATTAGAATTAGGAAAAAAAGTCA GACCCCTAACGAATAAAGATGGAGAAGTTCAAAAAGGTGGAGACTTTTTAATTACTCCAGATAGCCAGAGTTTAGTAATT TTACAAGGGGAAGGTACGTCTATTATACCTATAAATCCTGAAACGGATTCAGAAGATTTAATATTTTTACCAAAGTTTGG CAGGGTCTTAAGCTTCAGCAAAGATGGTTCTATGGCAACAATGGTAAAATATAATCAAGATGGTACACGATCTCTATATA TTGTGACGAATCAAGGTGAAGAAAAAGAGCTATTACGAACTCGTCCTTATGATAATATTCTGAGTACAGAATTTGACCCG ACGAAAACTATTTTATATTGCTTATTAACGGAAGGAATTGAGAATACAGAGGAAGATAAAAAACAACTTTATATTGCAGC ATTTGATCTTAAGAAAAATTATTTAATACCTTTAATTATTTTGCCAAATCAAAGGTCAGTTAATATGGATTTATCACCAG ATGGCTTAGTATTATTATTTGACCAGATGGTGACTAGATTAATAAAAGGGAAAGGACCTGAAAATTTGGAAAAAATCAGT CGTTTATGGATGTTACCTTTAGACGTTAAAATACTAGAGAATGATTCAAAATGGCAACTTAAACCAGAAGAATTACCTCT GACTGGTTTGAGTCCTCACTGGGCACCTTAG
Upstream 100 bases:
>100_bases TGTTTTTATTTTTTTTAATGTATTTTTTTGTTCAACATAATAAATAGGATTTTCCCAATAAAAATAGGATATTTTTTTGT GAAATACAAGGGTAAAACTA
Downstream 100 bases:
>100_bases TCATTTTTAGGATATGCTTATTATTTTCCAAGAGAAAATAAAATATTTTTTTCTTAACTATACTATTTCTTATATGTAAT AATTTAAGTATAGACATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MVNLRKKINYLFREAQTIILEELREPLDRVAISLIICITLLICLVLVVGGNIAPKVRDFSWQDQKIGFEDTAFILNFNRP MNHASVEKHLQIEPPLPGKVSWAGRRMAYTVLSSVPYGNKYTLKLSGAKEKFYGLDKGEVMEPFEGSFQSRDRAFAYIGI EGKEKGRLVLVNLTEQQQGIFLTPENLEVLDFKFFPEGKKVVFSAVEKFNGVPSSLEQKIYTVTTGVNDQYSIEKSESSE KVVGKIEKLLDNSEYQNLKFDLSLDGKIIVIQRVNRKDVFDAGPWVLELGKKVRPLTNKDGEVQKGGDFLITPDSQSLVI LQGEGTSIIPINPETDSEDLIFLPKFGRVLSFSKDGSMATMVKYNQDGTRSLYIVTNQGEEKELLRTRPYDNILSTEFDP TKTILYCLLTEGIENTEEDKKQLYIAAFDLKKNYLIPLIILPNQRSVNMDLSPDGLVLLFDQMVTRLIKGKGPENLEKIS RLWMLPLDVKILENDSKWQLKPEELPLTGLSPHWAP
Sequences:
>Translated_516_residues MVNLRKKINYLFREAQTIILEELREPLDRVAISLIICITLLICLVLVVGGNIAPKVRDFSWQDQKIGFEDTAFILNFNRP MNHASVEKHLQIEPPLPGKVSWAGRRMAYTVLSSVPYGNKYTLKLSGAKEKFYGLDKGEVMEPFEGSFQSRDRAFAYIGI EGKEKGRLVLVNLTEQQQGIFLTPENLEVLDFKFFPEGKKVVFSAVEKFNGVPSSLEQKIYTVTTGVNDQYSIEKSESSE KVVGKIEKLLDNSEYQNLKFDLSLDGKIIVIQRVNRKDVFDAGPWVLELGKKVRPLTNKDGEVQKGGDFLITPDSQSLVI LQGEGTSIIPINPETDSEDLIFLPKFGRVLSFSKDGSMATMVKYNQDGTRSLYIVTNQGEEKELLRTRPYDNILSTEFDP TKTILYCLLTEGIENTEEDKKQLYIAAFDLKKNYLIPLIILPNQRSVNMDLSPDGLVLLFDQMVTRLIKGKGPENLEKIS RLWMLPLDVKILENDSKWQLKPEELPLTGLSPHWAP >Mature_516_residues MVNLRKKINYLFREAQTIILEELREPLDRVAISLIICITLLICLVLVVGGNIAPKVRDFSWQDQKIGFEDTAFILNFNRP MNHASVEKHLQIEPPLPGKVSWAGRRMAYTVLSSVPYGNKYTLKLSGAKEKFYGLDKGEVMEPFEGSFQSRDRAFAYIGI EGKEKGRLVLVNLTEQQQGIFLTPENLEVLDFKFFPEGKKVVFSAVEKFNGVPSSLEQKIYTVTTGVNDQYSIEKSESSE KVVGKIEKLLDNSEYQNLKFDLSLDGKIIVIQRVNRKDVFDAGPWVLELGKKVRPLTNKDGEVQKGGDFLITPDSQSLVI LQGEGTSIIPINPETDSEDLIFLPKFGRVLSFSKDGSMATMVKYNQDGTRSLYIVTNQGEEKELLRTRPYDNILSTEFDP TKTILYCLLTEGIENTEEDKKQLYIAAFDLKKNYLIPLIILPNQRSVNMDLSPDGLVLLFDQMVTRLIKGKGPENLEKIS RLWMLPLDVKILENDSKWQLKPEELPLTGLSPHWAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58519; Mature: 58519
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNLRKKINYLFREAQTIILEELREPLDRVAISLIICITLLICLVLVVGGNIAPKVRDFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC WQDQKIGFEDTAFILNFNRPMNHASVEKHLQIEPPLPGKVSWAGRRMAYTVLSSVPYGNK CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHEEHHHHHCCCCCE YTLKLSGAKEKFYGLDKGEVMEPFEGSFQSRDRAFAYIGIEGKEKGRLVLVNLTEQQQGI EEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCE FLTPENLEVLDFKFFPEGKKVVFSAVEKFNGVPSSLEQKIYTVTTGVNDQYSIEKSESSE EECCCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHCEEEEEEECCCCCEEECCCCCHH KVVGKIEKLLDNSEYQNLKFDLSLDGKIIVIQRVNRKDVFDAGPWVLELGKKVRPLTNKD HHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCC GEVQKGGDFLITPDSQSLVILQGEGTSIIPINPETDSEDLIFLPKFGRVLSFSKDGSMAT CCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCCCCCEEEEECCCCEEEECCCCCEEE MVKYNQDGTRSLYIVTNQGEEKELLRTRPYDNILSTEFDPTKTILYCLLTEGIENTEEDK EEEECCCCCEEEEEEECCCCHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCC KQLYIAAFDLKKNYLIPLIILPNQRSVNMDLSPDGLVLLFDQMVTRLIKGKGPENLEKIS CEEEEEEEECCCCCEEEEEEECCCCCEECCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHH RLWMLPLDVKILENDSKWQLKPEELPLTGLSPHWAP HHEECCCEEEEEECCCCCEECHHHCCCCCCCCCCCC >Mature Secondary Structure MVNLRKKINYLFREAQTIILEELREPLDRVAISLIICITLLICLVLVVGGNIAPKVRDFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC WQDQKIGFEDTAFILNFNRPMNHASVEKHLQIEPPLPGKVSWAGRRMAYTVLSSVPYGNK CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHEEHHHHHCCCCCE YTLKLSGAKEKFYGLDKGEVMEPFEGSFQSRDRAFAYIGIEGKEKGRLVLVNLTEQQQGI EEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCE FLTPENLEVLDFKFFPEGKKVVFSAVEKFNGVPSSLEQKIYTVTTGVNDQYSIEKSESSE EECCCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHCEEEEEEECCCCCEEECCCCCHH KVVGKIEKLLDNSEYQNLKFDLSLDGKIIVIQRVNRKDVFDAGPWVLELGKKVRPLTNKD HHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCC GEVQKGGDFLITPDSQSLVILQGEGTSIIPINPETDSEDLIFLPKFGRVLSFSKDGSMAT CCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCCCCCEEEEECCCCEEEECCCCCEEE MVKYNQDGTRSLYIVTNQGEEKELLRTRPYDNILSTEFDPTKTILYCLLTEGIENTEEDK EEEECCCCCEEEEEEECCCCHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCC KQLYIAAFDLKKNYLIPLIILPNQRSVNMDLSPDGLVLLFDQMVTRLIKGKGPENLEKIS CEEEEEEEECCCCCEEEEEEECCCCCEECCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHH RLWMLPLDVKILENDSKWQLKPEELPLTGLSPHWAP HHEECCCEEEEEECCCCCEECHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA