The gene/protein map for NC_008312 is currently unavailable.
Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475765

Identifier: 113475765

GI number: 113475765

Start: 3310069

End: 3310506

Strand: Reverse

Name: 113475765

Synonym: Tery_2118

Alternate gene names: NA

Gene position: 3310506-3310069 (Counterclockwise)

Preceding gene: 113475766

Following gene: 113475760

Centisome position: 42.72

GC content: 34.93

Gene sequence:

>438_bases
ATGGCCGGGGTATGTAAAATAGAAATTACAGAAACAGTTCCAGAACTCAAAACATTGTTAAATCATCAAAAGACCGTTAG
TGGTTTTCAGAAGATTCAAGCATTGTATTTATTTAAAATTGGTCAAGTAGCAACTGTTAAAGAATTGGCAATTACTCTAG
GAGTAAATCGAATTACAGTGCAACGGTGGTTAAGACAATATCGCAAGGAAGGACTTCCAGGACTATTGCACGTTAAACAA
AATGGGGGACGCAAACCAGCAATTCCAGAAGAGGCACGAGATCAGTTGGAAAAACGACTGAATGATCCTGATAACGGTTT
TGAAAGTTATGGAGAAATTCAAACATGGTTACAAAAGGAGTATAATATTAATGCTTCTTACAAAGCAGTTTATGCTACTG
TTAAGTATCAGTTAAAGACTAAATTAGTCAAAAAATAA

Upstream 100 bases:

>100_bases
ATAAAATATTATAGTAGTAATTTATTATTTTGTATGCTACAGATATTATGGAAAAAGTTTTAATCTTAGAACAGTAGTAC
AAAGGTAAAAGGAAATAAAT

Downstream 100 bases:

>100_bases
TAGGTGTTCCTGAAGCAGAATGGTTTTTGGGGTTAGGGAGCAGGGAGTTTTTTCTTTGATCGGTGTTTTTGGAGAAGTCT
AATAGGACCTGCCTCGGTCG

Product: putative transposase

Products: NA

Alternate protein names: Transposase OrfA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAGVCKIEITETVPELKTLLNHQKTVSGFQKIQALYLFKIGQVATVKELAITLGVNRITVQRWLRQYRKEGLPGLLHVKQ
NGGRKPAIPEEARDQLEKRLNDPDNGFESYGEIQTWLQKEYNINASYKAVYATVKYQLKTKLVKK

Sequences:

>Translated_145_residues
MAGVCKIEITETVPELKTLLNHQKTVSGFQKIQALYLFKIGQVATVKELAITLGVNRITVQRWLRQYRKEGLPGLLHVKQ
NGGRKPAIPEEARDQLEKRLNDPDNGFESYGEIQTWLQKEYNINASYKAVYATVKYQLKTKLVKK
>Mature_144_residues
AGVCKIEITETVPELKTLLNHQKTVSGFQKIQALYLFKIGQVATVKELAITLGVNRITVQRWLRQYRKEGLPGLLHVKQN
GGRKPAIPEEARDQLEKRLNDPDNGFESYGEIQTWLQKEYNINASYKAVYATVKYQLKTKLVKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16617; Mature: 16485

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVCKIEITETVPELKTLLNHQKTVSGFQKIQALYLFKIGQVATVKELAITLGVNRITV
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHH
QRWLRQYRKEGLPGLLHVKQNGGRKPAIPEEARDQLEKRLNDPDNGFESYGEIQTWLQKE
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YNINASYKAVYATVKYQLKTKLVKK
CCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGVCKIEITETVPELKTLLNHQKTVSGFQKIQALYLFKIGQVATVKELAITLGVNRITV
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHH
QRWLRQYRKEGLPGLLHVKQNGGRKPAIPEEARDQLEKRLNDPDNGFESYGEIQTWLQKE
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YNINASYKAVYATVKYQLKTKLVKK
CCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA