| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475766
Identifier: 113475766
GI number: 113475766
Start: 3310984
End: 3311595
Strand: Reverse
Name: 113475766
Synonym: Tery_2119
Alternate gene names: NA
Gene position: 3311595-3310984 (Counterclockwise)
Preceding gene: 113475767
Following gene: 113475765
Centisome position: 42.73
GC content: 40.69
Gene sequence:
>612_bases ATGTCAAAGGTCTACAGCACTAACGAGCTAATAGATATCTTAGCTACAGAGCGCCAAGCTTGTCTTCTAGGGCAACGTCT TAATTTGGCTGCAACTCCCCATACTGGAAACCCAGTGGTTGACCAATTTCTCAAACCAGAAGCTTTCCAAAAGTTTACTG CTTATCAAGATTTTAAAGCTGCTATTCATCGCTACCAAAGAGAATATTTGGTCTCTGGTATTGTTTGGCGACAAGTTATG GTTAATGGTAGAACTATTAGTTTTCCTGTTGTGCATGAACAGTTAATTGCTTTGTCCGATGACTTAGAAATTTTGCAGGG AGCAAAGGTTTCTGTGTTAGATTTCTGGAACCAAGTGACGATAGGAATGGATTTGTATTTAAGTGTGAGTCATGGTCGAG ACTTTCGCCAAATAGAGATATATGAGGTAGAGGCGATCGCTCAACGTACAGAATGGGTCAATATGCTGAAATGGGAAAAA TCAAGCTTTTTGGAGATGCTTCTACAATTGGGATGGGGAAAACCAGAGTCAGCAGCTTATCGGAGAGGTTGGCCTAATTC TGGTAGTGAGTATATTCATGCTGTCAAACCAGGAAAACAACCTATTTGTTGA
Upstream 100 bases:
>100_bases AAGAAAAAAAACTTACTCTGATTGATTGATTCTCTACTCCCTAGCTAAAAATGTGTCAAAATAAAAGGATATTATTGAAC CCTGACTAATTTGTGTTCTT
Downstream 100 bases:
>100_bases GATCTTAATTTTTCATTAACTGGCTATCAGCTTTTTTTTTGACGGAATGCTGCACAAATTTCATTTAGCTGTAAATTAAA AAAAAATTTAGGGTAATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MSKVYSTNELIDILATERQACLLGQRLNLAATPHTGNPVVDQFLKPEAFQKFTAYQDFKAAIHRYQREYLVSGIVWRQVM VNGRTISFPVVHEQLIALSDDLEILQGAKVSVLDFWNQVTIGMDLYLSVSHGRDFRQIEIYEVEAIAQRTEWVNMLKWEK SSFLEMLLQLGWGKPESAAYRRGWPNSGSEYIHAVKPGKQPIC
Sequences:
>Translated_203_residues MSKVYSTNELIDILATERQACLLGQRLNLAATPHTGNPVVDQFLKPEAFQKFTAYQDFKAAIHRYQREYLVSGIVWRQVM VNGRTISFPVVHEQLIALSDDLEILQGAKVSVLDFWNQVTIGMDLYLSVSHGRDFRQIEIYEVEAIAQRTEWVNMLKWEK SSFLEMLLQLGWGKPESAAYRRGWPNSGSEYIHAVKPGKQPIC >Mature_202_residues SKVYSTNELIDILATERQACLLGQRLNLAATPHTGNPVVDQFLKPEAFQKFTAYQDFKAAIHRYQREYLVSGIVWRQVMV NGRTISFPVVHEQLIALSDDLEILQGAKVSVLDFWNQVTIGMDLYLSVSHGRDFRQIEIYEVEAIAQRTEWVNMLKWEKS SFLEMLLQLGWGKPESAAYRRGWPNSGSEYIHAVKPGKQPIC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23276; Mature: 23145
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVYSTNELIDILATERQACLLGQRLNLAATPHTGNPVVDQFLKPEAFQKFTAYQDFKA CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHH AIHRYQREYLVSGIVWRQVMVNGRTISFPVVHEQLIALSDDLEILQGAKVSVLDFWNQVT HHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHEE IGMDLYLSVSHGRDFRQIEIYEVEAIAQRTEWVNMLKWEKSSFLEMLLQLGWGKPESAAY ECEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RRGWPNSGSEYIHAVKPGKQPIC HCCCCCCCCCEEEEECCCCCCCC >Mature Secondary Structure SKVYSTNELIDILATERQACLLGQRLNLAATPHTGNPVVDQFLKPEAFQKFTAYQDFKA CCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHCCHHHHHHHHHHHHHHH AIHRYQREYLVSGIVWRQVMVNGRTISFPVVHEQLIALSDDLEILQGAKVSVLDFWNQVT HHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHEE IGMDLYLSVSHGRDFRQIEIYEVEAIAQRTEWVNMLKWEKSSFLEMLLQLGWGKPESAAY ECEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH RRGWPNSGSEYIHAVKPGKQPIC HCCCCCCCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA