| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475648
Identifier: 113475648
GI number: 113475648
Start: 3097023
End: 3097568
Strand: Reverse
Name: 113475648
Synonym: Tery_1985
Alternate gene names: NA
Gene position: 3097568-3097023 (Counterclockwise)
Preceding gene: 113475649
Following gene: 113475647
Centisome position: 39.97
GC content: 32.97
Gene sequence:
>546_bases ATGAGTATTCATCACATCAAATTACTATCTTTCCTCAAACCCAAAACTTTTATTCTGACATTATTATTTCTGGGATTATC TACTGTTTTTTTGTCAAGAGGTGCGTTTGCAAACGTGACTCCAAAGACTGATGAAGGTACAGAAAATAGTATCCCTGGAG GAACACGAGGAACGCCATGCTTTAGTGGTAAGAAAAAAACCATAACTCCTCTAGTTCCGAAAAAAAACAAAAAACCAGAA TTAAAAGTAACCCTAGTATCACATCCAAAAATGTTTATTTATGTGCCAGAAAATAAAGCTATCGTTGGAGAGTTTATCCT AAAAGATTCTAGTCAAAAAAAGGTATATCAAAATAAAGCATTATTACCTGAGAGTCAGGGAATTATAAATATTAAAATTC CTAGGGAACAACCAGAACTAAAAGTAGGTACAACTTATAACTGGAAATTAAGGTTAATTTGTGAAACTCCTAGTCGTAGA TCTAGGATGGAAGGCTCAATTCCAAGGGTTAATCCCAGTAAATATTTGACAAAAAAATTACAGTAA
Upstream 100 bases:
>100_bases TATTTATCCTGACTCCTGGTTCCTGACTTATGACTCCTACTCTTACCAAAAGATTATTTTGGCAAGTCTTAAGTAGAAAA AATACAAACCTTATCTAACT
Downstream 100 bases:
>100_bases ACTCCATATAGTGATCGCTGGTTAATTTATTCAGAAGCAGGAATAAAGCACGAAACATTGGTAAGCGTAGTAGAACAAAT TCATTCTAATTCCAACGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSIHHIKLLSFLKPKTFILTLLFLGLSTVFLSRGAFANVTPKTDEGTENSIPGGTRGTPCFSGKKKTITPLVPKKNKKPE LKVTLVSHPKMFIYVPENKAIVGEFILKDSSQKKVYQNKALLPESQGIINIKIPREQPELKVGTTYNWKLRLICETPSRR SRMEGSIPRVNPSKYLTKKLQ
Sequences:
>Translated_181_residues MSIHHIKLLSFLKPKTFILTLLFLGLSTVFLSRGAFANVTPKTDEGTENSIPGGTRGTPCFSGKKKTITPLVPKKNKKPE LKVTLVSHPKMFIYVPENKAIVGEFILKDSSQKKVYQNKALLPESQGIINIKIPREQPELKVGTTYNWKLRLICETPSRR SRMEGSIPRVNPSKYLTKKLQ >Mature_180_residues SIHHIKLLSFLKPKTFILTLLFLGLSTVFLSRGAFANVTPKTDEGTENSIPGGTRGTPCFSGKKKTITPLVPKKNKKPEL KVTLVSHPKMFIYVPENKAIVGEFILKDSSQKKVYQNKALLPESQGIINIKIPREQPELKVGTTYNWKLRLICETPSRRS RMEGSIPRVNPSKYLTKKLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20389; Mature: 20258
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIHHIKLLSFLKPKTFILTLLFLGLSTVFLSRGAFANVTPKTDEGTENSIPGGTRGTPC CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FSGKKKTITPLVPKKNKKPELKVTLVSHPKMFIYVPENKAIVGEFILKDSSQKKVYQNKA CCCCCCEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEHEEECCCCHHHHHHCCC LLPESQGIINIKIPREQPELKVGTTYNWKLRLICETPSRRSRMEGSIPRVNPSKYLTKKL CCCCCCCEEEEEECCCCCCEEECCEECEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHCC Q C >Mature Secondary Structure SIHHIKLLSFLKPKTFILTLLFLGLSTVFLSRGAFANVTPKTDEGTENSIPGGTRGTPC CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC FSGKKKTITPLVPKKNKKPELKVTLVSHPKMFIYVPENKAIVGEFILKDSSQKKVYQNKA CCCCCCEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEHEEECCCCHHHHHHCCC LLPESQGIINIKIPREQPELKVGTTYNWKLRLICETPSRRSRMEGSIPRVNPSKYLTKKL CCCCCCCEEEEEECCCCCCEEECCEECEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHCC Q C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA