| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474645
Identifier: 113474645
GI number: 113474645
Start: 1297259
End: 1298641
Strand: Reverse
Name: 113474645
Synonym: Tery_0817
Alternate gene names: NA
Gene position: 1298641-1297259 (Counterclockwise)
Preceding gene: 113474646
Following gene: 113474641
Centisome position: 16.76
GC content: 32.47
Gene sequence:
>1383_bases ATGTTAATTCTAAAAAATTATTCATATTTGTCTACTAAAATCTATTTTTTTGCCCGGGATCTTAGTCTATCTTTATTAAT AGTAATTTGCTACATTAATCCTGTTTTTGCTAAAGTCAAAAATCTGGAAATAATTGAGGCTATTCCTGATAGAAATGAAG GAAAAGTCACCCTCCGGGTTAAAGTCTACGACCAAAAAAATAAACCAATAAGAGGTATGCAAAAAAATGAGTTTAACTTA ACAGTTTGTCCGCCAAAATCTGACCCTAAAACTGGAGAATGTCAAACTTTAAACCAGGCAGATATTAATTTGAAAATTCC TCAACCTAAAGAATTACCTCCGGCTTGGGTAATTGTTTTATTAGATTTTAGTGGCAGTATGAAACAATTGGATAGTAGTG GAGAAAAAACTAAATTAGAAGGAGCGATCGCTGCTATTAGAAAGTTCAATCAAGATTTAGCTAAAAAGGGAGAAAATACC AGAATTTCCATCGTGCCCTTTGGCAAAGGAGGTAAAAATTGTCCGGGAAATCAAGTCAGGAAAAAACAACTAGATAATTT TGTTTTAGCTGGTAAAAAAAAGGTCGAACAGACTCTCAATAAATTAGAGAGTAAACTAGATAATCTTTGTGCAGCTACAG ATATTTATGAACCTTTGCGTCAGGCAGTACAATTTTTTGGTAATCCTGAAGATACTCGTTTTAACTTACCAATAAATTCT AATTTACCTCAGCCAAGACGTTCAATAATTTTACTTTCTGATGGCTATCATAGTATTTATGGAAATAGAGAAAATGAACC AGAATTAGAAGCACAAGATTTTGAAAAAATGATGTTTATGTTAAAAAGTTATCCTAATATTACTGTGCATACTTTAGGTT ATGGTTTGACTCCCCAACAGTTGCAACAAAAATATGATTTAAAGCAATCTCCAACTATTAGAGATATTAGTAAAAGAGGC AGAAAAAAAAGTAATGGATCAGAGAAATTAAGAGAAGTTGCTGCTGAAGAATTTGTTGATCAAAGGCGACTACAACAAAT CGCAGGAGTAACTAATGGTATTGCTGAATTTTCGGGAAATGCTGAAAATATTTCTACCAGTTTGACCGAATTTTTAGAGG CTTTATTTGATGAGTATCAAATTAATTATATTCAACCAATAAATGCTGACCGTGGCTCATTACATAATGTACAAGTTAGT TTTAAGTTGCCTAATAATTTAGTAGATTCTGAATTAGAGCCTTATGTATTTCCTTGGGTGTCGCGCTCCCTACCTCCTCT GACTAGAATCATCATTTTTTTATTCACATTAGCAGCATTATTAGGAGGTGGTGTAATACCGTTTTTATTATGGGCAAAAT CAATTAAACGAGAGTTTCAATAA
Upstream 100 bases:
>100_bases CTCAACTTTTTTAATAGAATAGAATATCTTGGCGATCGCCTGACTGAAAGTACACCAATTCAACTCAAATATAACGACTT AATTACATTTAATGCTGAAA
Downstream 100 bases:
>100_bases AAGTATAGGTGTGAGTAAATAAGTAAGTTGGCGTTAAAATTTGTCCCTATGTCACAAAATGTCAAGAACCCCCTCAACAG ATAGCAATTCTCATACAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MLILKNYSYLSTKIYFFARDLSLSLLIVICYINPVFAKVKNLEIIEAIPDRNEGKVTLRVKVYDQKNKPIRGMQKNEFNL TVCPPKSDPKTGECQTLNQADINLKIPQPKELPPAWVIVLLDFSGSMKQLDSSGEKTKLEGAIAAIRKFNQDLAKKGENT RISIVPFGKGGKNCPGNQVRKKQLDNFVLAGKKKVEQTLNKLESKLDNLCAATDIYEPLRQAVQFFGNPEDTRFNLPINS NLPQPRRSIILLSDGYHSIYGNRENEPELEAQDFEKMMFMLKSYPNITVHTLGYGLTPQQLQQKYDLKQSPTIRDISKRG RKKSNGSEKLREVAAEEFVDQRRLQQIAGVTNGIAEFSGNAENISTSLTEFLEALFDEYQINYIQPINADRGSLHNVQVS FKLPNNLVDSELEPYVFPWVSRSLPPLTRIIIFLFTLAALLGGGVIPFLLWAKSIKREFQ
Sequences:
>Translated_460_residues MLILKNYSYLSTKIYFFARDLSLSLLIVICYINPVFAKVKNLEIIEAIPDRNEGKVTLRVKVYDQKNKPIRGMQKNEFNL TVCPPKSDPKTGECQTLNQADINLKIPQPKELPPAWVIVLLDFSGSMKQLDSSGEKTKLEGAIAAIRKFNQDLAKKGENT RISIVPFGKGGKNCPGNQVRKKQLDNFVLAGKKKVEQTLNKLESKLDNLCAATDIYEPLRQAVQFFGNPEDTRFNLPINS NLPQPRRSIILLSDGYHSIYGNRENEPELEAQDFEKMMFMLKSYPNITVHTLGYGLTPQQLQQKYDLKQSPTIRDISKRG RKKSNGSEKLREVAAEEFVDQRRLQQIAGVTNGIAEFSGNAENISTSLTEFLEALFDEYQINYIQPINADRGSLHNVQVS FKLPNNLVDSELEPYVFPWVSRSLPPLTRIIIFLFTLAALLGGGVIPFLLWAKSIKREFQ >Mature_460_residues MLILKNYSYLSTKIYFFARDLSLSLLIVICYINPVFAKVKNLEIIEAIPDRNEGKVTLRVKVYDQKNKPIRGMQKNEFNL TVCPPKSDPKTGECQTLNQADINLKIPQPKELPPAWVIVLLDFSGSMKQLDSSGEKTKLEGAIAAIRKFNQDLAKKGENT RISIVPFGKGGKNCPGNQVRKKQLDNFVLAGKKKVEQTLNKLESKLDNLCAATDIYEPLRQAVQFFGNPEDTRFNLPINS NLPQPRRSIILLSDGYHSIYGNRENEPELEAQDFEKMMFMLKSYPNITVHTLGYGLTPQQLQQKYDLKQSPTIRDISKRG RKKSNGSEKLREVAAEEFVDQRRLQQIAGVTNGIAEFSGNAENISTSLTEFLEALFDEYQINYIQPINADRGSLHNVQVS FKLPNNLVDSELEPYVFPWVSRSLPPLTRIIIFLFTLAALLGGGVIPFLLWAKSIKREFQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52133; Mature: 52133
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: PS50234 VWFA ; PS00086 CYTOCHROME_P450
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLILKNYSYLSTKIYFFARDLSLSLLIVICYINPVFAKVKNLEIIEAIPDRNEGKVTLRV CEEEECCCHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEE KVYDQKNKPIRGMQKNEFNLTVCPPKSDPKTGECQTLNQADINLKIPQPKELPPAWVIVL EEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEE LDFSGSMKQLDSSGEKTKLEGAIAAIRKFNQDLAKKGENTRISIVPFGKGGKNCPGNQVR EECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHH KKQLDNFVLAGKKKVEQTLNKLESKLDNLCAATDIYEPLRQAVQFFGNPEDTRFNLPINS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC NLPQPRRSIILLSDGYHSIYGNRENEPELEAQDFEKMMFMLKSYPNITVHTLGYGLTPQQ CCCCCCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH LQQKYDLKQSPTIRDISKRGRKKSNGSEKLREVAAEEFVDQRRLQQIAGVTNGIAEFSGN HHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AENISTSLTEFLEALFDEYQINYIQPINADRGSLHNVQVSFKLPNNLVDSELEPYVFPWV HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEECCCCHHCCCCCCEEECHH SRSLPPLTRIIIFLFTLAALLGGGVIPFLLWAKSIKREFQ HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MLILKNYSYLSTKIYFFARDLSLSLLIVICYINPVFAKVKNLEIIEAIPDRNEGKVTLRV CEEEECCCHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEE KVYDQKNKPIRGMQKNEFNLTVCPPKSDPKTGECQTLNQADINLKIPQPKELPPAWVIVL EEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEE LDFSGSMKQLDSSGEKTKLEGAIAAIRKFNQDLAKKGENTRISIVPFGKGGKNCPGNQVR EECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHH KKQLDNFVLAGKKKVEQTLNKLESKLDNLCAATDIYEPLRQAVQFFGNPEDTRFNLPINS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC NLPQPRRSIILLSDGYHSIYGNRENEPELEAQDFEKMMFMLKSYPNITVHTLGYGLTPQQ CCCCCCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHH LQQKYDLKQSPTIRDISKRGRKKSNGSEKLREVAAEEFVDQRRLQQIAGVTNGIAEFSGN HHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AENISTSLTEFLEALFDEYQINYIQPINADRGSLHNVQVSFKLPNNLVDSELEPYVFPWV HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEECCCCHHCCCCCCEEECHH SRSLPPLTRIIIFLFTLAALLGGGVIPFLLWAKSIKREFQ HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA