Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474641

Identifier: 113474641

GI number: 113474641

Start: 1289781

End: 1291256

Strand: Reverse

Name: 113474641

Synonym: Tery_0813

Alternate gene names: NA

Gene position: 1291256-1289781 (Counterclockwise)

Preceding gene: 113474645

Following gene: 113474639

Centisome position: 16.66

GC content: 39.7

Gene sequence:

>1476_bases
ATGACAAAATCTATACGTCGAAGAGGTGTCATCCTTAGTTCTCAAGGTTGTAGAAAACTTATTAAGACTAAATCAGACTT
AGAAGTTCAGCAAAATCAGCGATATACTCTTGAATCTCTTAGTGAAAAAATCGGCTTAACCCCCAATACCATCAGCAAAG
TCTTTACCTGCTCATCAGGAGTTGATAAACGTACCTTGAAGTGCTGCTTCCAGGCTTTTAATCTAACCTTAACAAGAGAA
GACTATGTTTACCTACAGTCCAATCAAGAGAATTTAGAGGAGATTAACCCCATACCACTAGCCAAAACCTGCTTCTTCCC
AAAACTAACCTACAGCTCTTCTTTGCATCTGCTGCCCTATCAGAACAATAGCCCCCAAGGCAAAAACATGGTTAAACCAC
AACAAAAGCTACAATCTCATCTGCCAAAAACACCGGGAGGACAGATGCCTATTGATTCTGTCTTTTACATTGACCGTCCT
ATAATCCAATCCCTTTGTAACAAAAGCATCCAGCAACCAGGTACACTTTTGAACATCTGCGCCCCCAAGCAAATGGGTAA
AACCTCCCTAATGAGCCGCATCATTGCTTTCGCTAAATCCCTGGGGTATCAAACCTTTTATCTGAATTTGCAACTCGTTG
ACCTCAAAATTTTACAGAACCTAGAAAGCTTCCTGCAATGGTTCTGTGCTAGAGTTACTCAGGAGTTAAAATTGTCTCAA
GCCCACTCAAATCAAGCAATTTACCATGAGCAGATAACCGCTTTTTGGCAGAATTCTTTGGGTAACAAATCAATCGCTAC
TGACTATTTAAATGATATCATCTTAACCCAAAGCGATCGCCCTCTAGTAATAGCTATTGATGAACTCAATCAGCTTTTTA
CTTACCCCGATATTGCTTGTGAATTTCTCCAACTTCTGCGAGCTTGGTCTGGGAGAACTCAAGCAGGGGAAACAGAAAGT
CATCCTTGGCAAAAACTACGACTGCTGACAATTTATTCTACAGAAATTATGATGCCTTCCTCAATTAATCCCTCCCTATT
GAATACTGGAACACTCATCAATTTACCTGAATTTACCCCAGCTCAAGTGCAGGAGCTAGCACAGCGCTACCAACAAGAAA
TAACCGAATCACAAATCCAGCAATTAATTACTATTCTTGGCGGACATCCCTATCGTTTGCAGTTAGCATTTTATTCTCTA
TACCAACAGACTATAACCCTAGAAGCAATTTTAGAAAATTCTGATAGTCTAACTGTTCTTTATGCAGAACATTTACAACA
ACAATGGTGGAACCTGCAACACTACCACGAATTATTGCCGATTTTTACTAAAATTGTCAACAACCCCAAACCGATAAAAA
TCCAACTATCTCTTGGTTATCAGTTGCAAAAGATGGGATTAGTTCGCCTCAAAGGTAATCTTGCAAGTCTCTCTTGTGAG
TTATTTCGTCCGTTTTTTATGGGAGCTTTGAATTGA

Upstream 100 bases:

>100_bases
CATATAGTAGTATTATGTAAGTATAAATCAAGCATGAATACTAGGGTGTATTTTACTTTTACTAAAATTATAACTATATT
ACATCCTGAATATAACAACA

Downstream 100 bases:

>100_bases
TTGTTATTGGGATGGCGGTGGGTGATATTCTCTTGACAAACGCTACTGATACTGCGGTGTATTACATTTCATTAATGTAC
CCGACTGAAATGGGCTGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRE
DYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRP
IIQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ
AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETES
HPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSL
YQQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE
LFRPFFMGALN

Sequences:

>Translated_491_residues
MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRE
DYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRP
IIQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ
AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETES
HPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSL
YQQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE
LFRPFFMGALN
>Mature_490_residues
TKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRED
YVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPI
IQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQA
HSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETESH
PWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLY
QQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCEL
FRPFFMGALN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56194; Mature: 56063

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSG
CCCCHHHCCCEECCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCC
VDKRTLKCCFQAFNLTLTREDYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPY
CCHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEC
QNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPIIQSLCNKSIQQPGTLLNIC
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEC
APKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ
CCHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIAC
HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHH
EFLQLLRAWSGRTQAGETESHPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTP
HHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCH
AQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLYQQTITLEAILENSDSLTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEE
YAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHCCEEEEECCHHHHHHH
LFRPFFMGALN
HHHHHHHHCCC
>Mature Secondary Structure 
TKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSG
CCCHHHCCCEECCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCC
VDKRTLKCCFQAFNLTLTREDYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPY
CCHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEC
QNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPIIQSLCNKSIQQPGTLLNIC
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEC
APKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ
CCHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIAC
HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHH
EFLQLLRAWSGRTQAGETESHPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTP
HHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCH
AQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLYQQTITLEAILENSDSLTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEE
YAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE
HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHCCEEEEECCHHHHHHH
LFRPFFMGALN
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA