| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474641
Identifier: 113474641
GI number: 113474641
Start: 1289781
End: 1291256
Strand: Reverse
Name: 113474641
Synonym: Tery_0813
Alternate gene names: NA
Gene position: 1291256-1289781 (Counterclockwise)
Preceding gene: 113474645
Following gene: 113474639
Centisome position: 16.66
GC content: 39.7
Gene sequence:
>1476_bases ATGACAAAATCTATACGTCGAAGAGGTGTCATCCTTAGTTCTCAAGGTTGTAGAAAACTTATTAAGACTAAATCAGACTT AGAAGTTCAGCAAAATCAGCGATATACTCTTGAATCTCTTAGTGAAAAAATCGGCTTAACCCCCAATACCATCAGCAAAG TCTTTACCTGCTCATCAGGAGTTGATAAACGTACCTTGAAGTGCTGCTTCCAGGCTTTTAATCTAACCTTAACAAGAGAA GACTATGTTTACCTACAGTCCAATCAAGAGAATTTAGAGGAGATTAACCCCATACCACTAGCCAAAACCTGCTTCTTCCC AAAACTAACCTACAGCTCTTCTTTGCATCTGCTGCCCTATCAGAACAATAGCCCCCAAGGCAAAAACATGGTTAAACCAC AACAAAAGCTACAATCTCATCTGCCAAAAACACCGGGAGGACAGATGCCTATTGATTCTGTCTTTTACATTGACCGTCCT ATAATCCAATCCCTTTGTAACAAAAGCATCCAGCAACCAGGTACACTTTTGAACATCTGCGCCCCCAAGCAAATGGGTAA AACCTCCCTAATGAGCCGCATCATTGCTTTCGCTAAATCCCTGGGGTATCAAACCTTTTATCTGAATTTGCAACTCGTTG ACCTCAAAATTTTACAGAACCTAGAAAGCTTCCTGCAATGGTTCTGTGCTAGAGTTACTCAGGAGTTAAAATTGTCTCAA GCCCACTCAAATCAAGCAATTTACCATGAGCAGATAACCGCTTTTTGGCAGAATTCTTTGGGTAACAAATCAATCGCTAC TGACTATTTAAATGATATCATCTTAACCCAAAGCGATCGCCCTCTAGTAATAGCTATTGATGAACTCAATCAGCTTTTTA CTTACCCCGATATTGCTTGTGAATTTCTCCAACTTCTGCGAGCTTGGTCTGGGAGAACTCAAGCAGGGGAAACAGAAAGT CATCCTTGGCAAAAACTACGACTGCTGACAATTTATTCTACAGAAATTATGATGCCTTCCTCAATTAATCCCTCCCTATT GAATACTGGAACACTCATCAATTTACCTGAATTTACCCCAGCTCAAGTGCAGGAGCTAGCACAGCGCTACCAACAAGAAA TAACCGAATCACAAATCCAGCAATTAATTACTATTCTTGGCGGACATCCCTATCGTTTGCAGTTAGCATTTTATTCTCTA TACCAACAGACTATAACCCTAGAAGCAATTTTAGAAAATTCTGATAGTCTAACTGTTCTTTATGCAGAACATTTACAACA ACAATGGTGGAACCTGCAACACTACCACGAATTATTGCCGATTTTTACTAAAATTGTCAACAACCCCAAACCGATAAAAA TCCAACTATCTCTTGGTTATCAGTTGCAAAAGATGGGATTAGTTCGCCTCAAAGGTAATCTTGCAAGTCTCTCTTGTGAG TTATTTCGTCCGTTTTTTATGGGAGCTTTGAATTGA
Upstream 100 bases:
>100_bases CATATAGTAGTATTATGTAAGTATAAATCAAGCATGAATACTAGGGTGTATTTTACTTTTACTAAAATTATAACTATATT ACATCCTGAATATAACAACA
Downstream 100 bases:
>100_bases TTGTTATTGGGATGGCGGTGGGTGATATTCTCTTGACAAACGCTACTGATACTGCGGTGTATTACATTTCATTAATGTAC CCGACTGAAATGGGCTGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRE DYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRP IIQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETES HPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSL YQQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE LFRPFFMGALN
Sequences:
>Translated_491_residues MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRE DYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRP IIQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETES HPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSL YQQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE LFRPFFMGALN >Mature_490_residues TKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSGVDKRTLKCCFQAFNLTLTRED YVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPYQNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPI IQSLCNKSIQQPGTLLNICAPKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQA HSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIACEFLQLLRAWSGRTQAGETESH PWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTPAQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLY QQTITLEAILENSDSLTVLYAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCEL FRPFFMGALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56194; Mature: 56063
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSG CCCCHHHCCCEECCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCC VDKRTLKCCFQAFNLTLTREDYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPY CCHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEC QNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPIIQSLCNKSIQQPGTLLNIC CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEC APKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ CCHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIAC HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHH EFLQLLRAWSGRTQAGETESHPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTP HHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCH AQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLYQQTITLEAILENSDSLTVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEE YAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHCCEEEEECCHHHHHHH LFRPFFMGALN HHHHHHHHCCC >Mature Secondary Structure TKSIRRRGVILSSQGCRKLIKTKSDLEVQQNQRYTLESLSEKIGLTPNTISKVFTCSSG CCCHHHCCCEECCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCC VDKRTLKCCFQAFNLTLTREDYVYLQSNQENLEEINPIPLAKTCFFPKLTYSSSLHLLPY CCHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHCCCCCCHHHHCCCCCCCCCCEEEEEC QNNSPQGKNMVKPQQKLQSHLPKTPGGQMPIDSVFYIDRPIIQSLCNKSIQQPGTLLNIC CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEC APKQMGKTSLMSRIIAFAKSLGYQTFYLNLQLVDLKILQNLESFLQWFCARVTQELKLSQ CCHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AHSNQAIYHEQITAFWQNSLGNKSIATDYLNDIILTQSDRPLVIAIDELNQLFTYPDIAC HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCEEEEEHHHHHHHCCHHHHH EFLQLLRAWSGRTQAGETESHPWQKLRLLTIYSTEIMMPSSINPSLLNTGTLINLPEFTP HHHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCH AQVQELAQRYQQEITESQIQQLITILGGHPYRLQLAFYSLYQQTITLEAILENSDSLTVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEE YAEHLQQQWWNLQHYHELLPIFTKIVNNPKPIKIQLSLGYQLQKMGLVRLKGNLASLSCE HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEHHCCEEEEECCHHHHHHH LFRPFFMGALN HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA