Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474476
Identifier: 113474476
GI number: 113474476
Start: 1011270
End: 1011488
Strand: Reverse
Name: 113474476
Synonym: Tery_0622
Alternate gene names: NA
Gene position: 1011488-1011270 (Counterclockwise)
Preceding gene: 113474477
Following gene: 113474467
Centisome position: 13.05
GC content: 36.53
Gene sequence:
>219_bases ATGAGCCAACAGGTCATACACCCGATGGATAAACTCCAACGTCAGGTAAATTCTCTTCGGGAATCTAACATAATTAAGCC AACAGATAGTATCTGGAAGATAGCTCTACTTTTTGGAGATAAATGGGTTTATTGGAAAAAAGAACTAGAAGAGTTTGGTT TTTCTATGAAAGATCCAATTAGTGAACTATTAGCTGTAGAAGCTTGGGAAGAGGATTAA
Upstream 100 bases:
>100_bases ATTTAAAGTACCTTCTCCAAGGCCACAAAAAATCTACGGATCGGTAAAAGTGAGAATGGAGATGCTGTATTTAGCAGAAT TTTAAAAATTAAGAGGTATT
Downstream 100 bases:
>100_bases TTTACTCACCTTCCCAATTAGGCTTAAGGTAAGCAGCTAAAGAGATTATAGCTTTCAGGTAAAATATTCCTTATGGTTGT CGTCCCTTGTGGCAACCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 72; Mature: 71
Protein sequence:
>72_residues MSQQVIHPMDKLQRQVNSLRESNIIKPTDSIWKIALLFGDKWVYWKKELEEFGFSMKDPISELLAVEAWEED
Sequences:
>Translated_72_residues MSQQVIHPMDKLQRQVNSLRESNIIKPTDSIWKIALLFGDKWVYWKKELEEFGFSMKDPISELLAVEAWEED >Mature_71_residues SQQVIHPMDKLQRQVNSLRESNIIKPTDSIWKIALLFGDKWVYWKKELEEFGFSMKDPISELLAVEAWEED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8567; Mature: 8436
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQQVIHPMDKLQRQVNSLRESNIIKPTDSIWKIALLFGDKWVYWKKELEEFGFSMKDPI CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH SELLAVEAWEED HHHHHHHCCCCC >Mature Secondary Structure SQQVIHPMDKLQRQVNSLRESNIIKPTDSIWKIALLFGDKWVYWKKELEEFGFSMKDPI CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH SELLAVEAWEED HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA