Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
---|---|
Accession | NC_008312 |
Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474467
Identifier: 113474467
GI number: 113474467
Start: 989491
End: 989970
Strand: Reverse
Name: 113474467
Synonym: Tery_0611
Alternate gene names: NA
Gene position: 989970-989491 (Counterclockwise)
Preceding gene: 113474476
Following gene: 113474465
Centisome position: 12.77
GC content: 35.62
Gene sequence:
>480_bases ATGACAATTACGATCACTGTTAATACTGAACAGATCCATAACTTAGATTTATCCCCATTTGAAGGTGTAATTTATCCAAT ACTTAATGAAGGAACGATCGCCTCTTCTGAACAGCAGCTGAATTTTGCCATTAACTATTACCAAGAACCCCAAGATCCAA GGGAACTTTCAGAAATTCCAGAAGTGCGTTTATGGTTTATCCGTTTAGACAGTTGTTATCCTTGGTTGCCATTTCTGCTC AACTGGAAAATGGGAGAGCTGTCTCGCTATACTGCAATGCTTGTACCTCACCAATTTCATCGAACTGAAGGTATCCAATA TAACCCAGAAGCATTAGAAATATTTTTGATGCACAAAATTTTTATTTTGAGAAACTGGTTAAATAAACATCATATTTCTA GTAAATCCAGATTAATGTCCATGTCTCAAATGTTGGGGTATGATTTGACAGAGGAATTTTTTGTATCAATTCCAGACTAA
Upstream 100 bases:
>100_bases TTTGTCTTGTATCTAGGCAGTTTATGTAAGAGTGTGGCTTACTTAAGAATCCCACATTTTTTTGACAACAAAAGGAACTT TATAATTATCTACAACCAGA
Downstream 100 bases:
>100_bases AGGCAATCAATAATATGATATATCTGAGGAGGGAGATAAATATAAGTGGGACAGGATGCCCACCCAAAAATATAAGGAAT AATGGGACAAAAATCACCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTITITVNTEQIHNLDLSPFEGVIYPILNEGTIASSEQQLNFAINYYQEPQDPRELSEIPEVRLWFIRLDSCYPWLPFLL NWKMGELSRYTAMLVPHQFHRTEGIQYNPEALEIFLMHKIFILRNWLNKHHISSKSRLMSMSQMLGYDLTEEFFVSIPD
Sequences:
>Translated_159_residues MTITITVNTEQIHNLDLSPFEGVIYPILNEGTIASSEQQLNFAINYYQEPQDPRELSEIPEVRLWFIRLDSCYPWLPFLL NWKMGELSRYTAMLVPHQFHRTEGIQYNPEALEIFLMHKIFILRNWLNKHHISSKSRLMSMSQMLGYDLTEEFFVSIPD >Mature_158_residues TITITVNTEQIHNLDLSPFEGVIYPILNEGTIASSEQQLNFAINYYQEPQDPRELSEIPEVRLWFIRLDSCYPWLPFLLN WKMGELSRYTAMLVPHQFHRTEGIQYNPEALEIFLMHKIFILRNWLNKHHISSKSRLMSMSQMLGYDLTEEFFVSIPD
Specific function: Unknown
COG id: COG5474
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18853; Mature: 18722
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITITVNTEQIHNLDLSPFEGVIYPILNEGTIASSEQQLNFAINYYQEPQDPRELSEIP CEEEEEEEHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHCC EVRLWFIRLDSCYPWLPFLLNWKMGELSRYTAMLVPHQFHRTEGIQYNPEALEIFLMHKI CEEEEEEEECCCCCCCHHHCCCCCCCHHHHHHEECCHHHHHCCCCCCCHHHHHHHHHHHH FILRNWLNKHHISSKSRLMSMSQMLGYDLTEEFFVSIPD HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHEEECCC >Mature Secondary Structure TITITVNTEQIHNLDLSPFEGVIYPILNEGTIASSEQQLNFAINYYQEPQDPRELSEIP EEEEEEEHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHCC EVRLWFIRLDSCYPWLPFLLNWKMGELSRYTAMLVPHQFHRTEGIQYNPEALEIFLMHKI CEEEEEEEECCCCCCCHHHCCCCCCCHHHHHHEECCHHHHHCCCCCCCHHHHHHHHHHHH FILRNWLNKHHISSKSRLMSMSQMLGYDLTEEFFVSIPD HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA