| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474390
Identifier: 113474390
GI number: 113474390
Start: 831588
End: 832475
Strand: Direct
Name: 113474390
Synonym: Tery_0526
Alternate gene names: NA
Gene position: 831588-832475 (Clockwise)
Preceding gene: 113474389
Following gene: 113474391
Centisome position: 10.73
GC content: 34.57
Gene sequence:
>888_bases ATGAAAGTTAATTTTTCGGAAGTGAGCCAACGCCATATCTGCATTGCTCTATTTATATTTTGTTCTCTTTTACAACGTTC GATTTCTCCTTTATTTTTACTTCCTTTGTTGTTACAAGAAAAACGTAATTTATTGGGACAAATTGCTGAGGTTAAATTTA ATAACGATAATAATAATTTACAATTTTTACAGCAACACAGTCAACAACTGAATAATTTAGAGCGTCAATTTCAAAAGGGA CAAAAAACTGTTGATAAACTACAACATAAAGTTCAGACTCAGGACACTCGCCAGAATTTAATTTTATCTAAAAGTAGTAA GCAAAGTAATCAAATTTGTTTGTTGGAAGATCGGATTAATTCTATTCAGGAAAGGTTTAAGTCGGTGCCTTCAAAGGTTG TGCCGATTCAACGTCGTACCCTATTGGCAATTGATTCTGCAAATTTGGATGGTGCTGCTAAAAGTTTGAATATGAAGGTT GATTATGAAAGATTAAAACGCTATGTTAATGTTCATTTTGGTTCTCTGGAAGCTCGAATTTATGTGGGGAAGTATGATAA TAGTTCTCGGCAGAAATTGTGGTTTAATTACTTAGAAAAAAATGGATATGTGGTGAAGACAAAGCCTGTTACGGTCTATG GAAATACAGTTAAGGCTAATGTTGATGTGGATTTGGCTTTGGATATTAGGGAGCATGGGGTGAATTTCAAAAATGTGGTT TTATGTAGTGGGGATGGTGATTATTTGCCACTTGTTGAACAATTACAAGGGTTGGGTATTAAGGTGATAGTTCTTGCTTC CCCAGGACATACTAACCACTTTTTGCAAAGGCAAGCGGATGAGTATATTAGTTTGATTGATATTATGGGGGAAATTAGCG ATCGCTAA
Upstream 100 bases:
>100_bases TCAGAACGGTTGTATAGCTTTTATATTTAGCAAGTGCAACATTTTTTTATTTCCACGGATAGTTTAATTATCATGTGAAG TTATTAATATTTTTAAAAGT
Downstream 100 bases:
>100_bases TCAATTATAGGTATAAATAAGTTAGGAAAAAGTAGGGGCAAATCGCAGTTTTACTGGTGGATATTAAACGCCCCTAAATG AGTCAGAATAGAAGAGGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKVNFSEVSQRHICIALFIFCSLLQRSISPLFLLPLLLQEKRNLLGQIAEVKFNNDNNNLQFLQQHSQQLNNLERQFQKG QKTVDKLQHKVQTQDTRQNLILSKSSKQSNQICLLEDRINSIQERFKSVPSKVVPIQRRTLLAIDSANLDGAAKSLNMKV DYERLKRYVNVHFGSLEARIYVGKYDNSSRQKLWFNYLEKNGYVVKTKPVTVYGNTVKANVDVDLALDIREHGVNFKNVV LCSGDGDYLPLVEQLQGLGIKVIVLASPGHTNHFLQRQADEYISLIDIMGEISDR
Sequences:
>Translated_295_residues MKVNFSEVSQRHICIALFIFCSLLQRSISPLFLLPLLLQEKRNLLGQIAEVKFNNDNNNLQFLQQHSQQLNNLERQFQKG QKTVDKLQHKVQTQDTRQNLILSKSSKQSNQICLLEDRINSIQERFKSVPSKVVPIQRRTLLAIDSANLDGAAKSLNMKV DYERLKRYVNVHFGSLEARIYVGKYDNSSRQKLWFNYLEKNGYVVKTKPVTVYGNTVKANVDVDLALDIREHGVNFKNVV LCSGDGDYLPLVEQLQGLGIKVIVLASPGHTNHFLQRQADEYISLIDIMGEISDR >Mature_295_residues MKVNFSEVSQRHICIALFIFCSLLQRSISPLFLLPLLLQEKRNLLGQIAEVKFNNDNNNLQFLQQHSQQLNNLERQFQKG QKTVDKLQHKVQTQDTRQNLILSKSSKQSNQICLLEDRINSIQERFKSVPSKVVPIQRRTLLAIDSANLDGAAKSLNMKV DYERLKRYVNVHFGSLEARIYVGKYDNSSRQKLWFNYLEKNGYVVKTKPVTVYGNTVKANVDVDLALDIREHGVNFKNVV LCSGDGDYLPLVEQLQGLGIKVIVLASPGHTNHFLQRQADEYISLIDIMGEISDR
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33785; Mature: 33785
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVNFSEVSQRHICIALFIFCSLLQRSISPLFLLPLLLQEKRNLLGQIAEVKFNNDNNNL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHH QFLQQHSQQLNNLERQFQKGQKTVDKLQHKVQTQDTRQNLILSKSSKQSNQICLLEDRIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEHHHHH SIQERFKSVPSKVVPIQRRTLLAIDSANLDGAAKSLNMKVDYERLKRYVNVHFGSLEARI HHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHCCCEECHHHHHHHHHHEECCEEEEE YVGKYDNSSRQKLWFNYLEKNGYVVKTKPVTVYGNTVKANVDVDLALDIREHGVNFKNVV EEEECCCCCHHHHHHHHHHCCCEEEEECCEEEECCEEEEECEEEEEEEHHHHCCCCCEEE LCSGDGDYLPLVEQLQGLGIKVIVLASPGHTNHFLQRQADEYISLIDIMGEISDR EECCCCCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKVNFSEVSQRHICIALFIFCSLLQRSISPLFLLPLLLQEKRNLLGQIAEVKFNNDNNNL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHH QFLQQHSQQLNNLERQFQKGQKTVDKLQHKVQTQDTRQNLILSKSSKQSNQICLLEDRIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEHHHHH SIQERFKSVPSKVVPIQRRTLLAIDSANLDGAAKSLNMKVDYERLKRYVNVHFGSLEARI HHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHCCCEECHHHHHHHHHHEECCEEEEE YVGKYDNSSRQKLWFNYLEKNGYVVKTKPVTVYGNTVKANVDVDLALDIREHGVNFKNVV EEEECCCCCHHHHHHHHHHCCCEEEEECCEEEECCEEEEECEEEEEEEHHHHCCCCCEEE LCSGDGDYLPLVEQLQGLGIKVIVLASPGHTNHFLQRQADEYISLIDIMGEISDR EECCCCCCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA