Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474269
Identifier: 113474269
GI number: 113474269
Start: 603834
End: 605684
Strand: Direct
Name: 113474269
Synonym: Tery_0389
Alternate gene names: NA
Gene position: 603834-605684 (Clockwise)
Preceding gene: 113474268
Following gene: 113474272
Centisome position: 7.79
GC content: 39.22
Gene sequence:
>1851_bases ATGGAAAGCTTAACCCGCGATAATATTTATACCGTAGATCAAAAGGCCAGTTATTTACAACTGCGAAGTGTTTCCCTAGA TAGAAAAGTTACTACCAGAACAATTGAACCCAAAAGTCTGACCGGGTTAGAAATTTCCATGAGTTTAACAGCAGATTGTA TTTTTCCAGATACTCCCAACGACCAAAAATGTAGCTATACCCCTAGTATAATTACAGATCGCAATAGCATAGATTCAGAT TTTTTAGTACCCACCCGCATCTCACAAACTTCTCAAGCAGGGGAAATTGTGAAACCAGAAACCTTAGCCTTCATGGAGCG CCCCGGTTTTCAAGCAGGAACAAGCACTCAACCTATAGGACTAGAGTTGTATTTTCCCAATGCCGGTGCTTTTCCTGGAA ACACTCAATCTCAAAAAACTCAAATTGAGCGGAAAGAAGAAAACAATTATACAGCTTTCACCATAAACTCACGAATTCGT CAAGTTGTCAAAGCTAACGATACAGAAGCAGTTCTCGGGCGCACAATTCAGGGTTTTGTATTTTTTGACGATGAAAACCA GGGGTTAAATACAACCATTCAAGGGGTGGCGCAATTTTTACCCGATATCATTCCCGACTTAAAAGGCAGTGAAAATCCTG TCAACTCCAGGATCAACCGCCATTTATTTTTAGCCCCTAACAATACTCGTTTACCCGGCAACAGTTATACCATCTATTCC GCTGGAGTAGGTAGAGCCAAAAGTTTAACACCTGATATCACCAGCTTAAGTCAAGTTCCCAAAGGAAGTTATCATAGTAT TTGGTTAGGTCTTTCCCCCATTATTGACCGTAGTATTAACCAAGGCCGTACATTCTATGACCCCACAAGTCCACAAGTAG CGACCACCAGTTCTGGCAGTGAAGGTGGGGAAGGTAGTAATGTAGATTTCACCTCTGCAATTAATCAAGACACATTTTCC ACAGTTAGTCAAGACACATTTTCCACTCCCAACCTCCGTAATTTCTATGTTCAAGTTTATCTCCAATTTTTAGAACAAGA TGCTAACCTCGTTCAGGAAAGTATTTATCAGGAGAAAACAAGTTACTATCCCCATCTGAGCTTTGCCGGAAACTGGACTG GTCCTCAAGATCTTTTCCGTTATTATACTGGTGCCATTGCCTCTGAAAAAATTAAGTTTTACCTGGGTTTTGACTATACT ATTAGTACAGTAAATGGTTGGAAGTTTCGCACTGGTGGCATCGGTTATATTAATCCAGATCGGGATTATTACAGCCAAAT TTTTGGCAATGCTACCAAAACATTTCGGATTAGTAAAAATGCTAATTTTACCTTGTCAACATTCTTTAATTATGCTATTG ATCGGGATACTAAAATTGGTAGTGTTGTCAGCAATTCACCTGCTAGCGCACTTGCTGCCAGAGCTCGTTTGAATTGGATA AAAGGTTCTGTTGGTGTCACCTACTATTTTGGTAATGTTATACCCAATTCTTTTGAAAACCGCTTATTGCTAGAGTTGAG TATTCGTCCGCTCAAAACAGTTACTTTTGGTGTTACCTACTCTTGGGCTAAAGTTATACCCAATTCTTTTGAAGATCGCT TATTGCTAAAGTTGAGTATTCGTCCGCTCCCAACAGTTACTTTCTCTAGCTTTGTTGCACCAATTGATAAAACTTCTAAT TCCTCTCCCTATGGTGCCAGTGTAACTTGGAAACTGAAAAATAAATATAACAGTCCGACCCTATCTTTGAATTGGCAAAA TCAGAAACATAATTATGCTGATGACCCTTTTGGAAATGAAATTATCGTAAATGATAATAATTTTACAGTCATGTTTCGCC TTAGTAAGTAG
Upstream 100 bases:
>100_bases TCACCTCACAAAATGGCAGTTTAGTAGTTCCCAAGCTTTTGCCAATACTGCCAACAATGACATTATTTTAAATGGTATCT TTAAACTTAACGGTAGAGTT
Downstream 100 bases:
>100_bases AGGCAATTTATGAATTTCCCCTAAAAAAGTTAAATTTTCAACTAACCCAAGTTTGTTATCGTACTAATTACTAATTCCAT AGTTATACCAAGTTCAGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MESLTRDNIYTVDQKASYLQLRSVSLDRKVTTRTIEPKSLTGLEISMSLTADCIFPDTPNDQKCSYTPSIITDRNSIDSD FLVPTRISQTSQAGEIVKPETLAFMERPGFQAGTSTQPIGLELYFPNAGAFPGNTQSQKTQIERKEENNYTAFTINSRIR QVVKANDTEAVLGRTIQGFVFFDDENQGLNTTIQGVAQFLPDIIPDLKGSENPVNSRINRHLFLAPNNTRLPGNSYTIYS AGVGRAKSLTPDITSLSQVPKGSYHSIWLGLSPIIDRSINQGRTFYDPTSPQVATTSSGSEGGEGSNVDFTSAINQDTFS TVSQDTFSTPNLRNFYVQVYLQFLEQDANLVQESIYQEKTSYYPHLSFAGNWTGPQDLFRYYTGAIASEKIKFYLGFDYT ISTVNGWKFRTGGIGYINPDRDYYSQIFGNATKTFRISKNANFTLSTFFNYAIDRDTKIGSVVSNSPASALAARARLNWI KGSVGVTYYFGNVIPNSFENRLLLELSIRPLKTVTFGVTYSWAKVIPNSFEDRLLLKLSIRPLPTVTFSSFVAPIDKTSN SSPYGASVTWKLKNKYNSPTLSLNWQNQKHNYADDPFGNEIIVNDNNFTVMFRLSK
Sequences:
>Translated_616_residues MESLTRDNIYTVDQKASYLQLRSVSLDRKVTTRTIEPKSLTGLEISMSLTADCIFPDTPNDQKCSYTPSIITDRNSIDSD FLVPTRISQTSQAGEIVKPETLAFMERPGFQAGTSTQPIGLELYFPNAGAFPGNTQSQKTQIERKEENNYTAFTINSRIR QVVKANDTEAVLGRTIQGFVFFDDENQGLNTTIQGVAQFLPDIIPDLKGSENPVNSRINRHLFLAPNNTRLPGNSYTIYS AGVGRAKSLTPDITSLSQVPKGSYHSIWLGLSPIIDRSINQGRTFYDPTSPQVATTSSGSEGGEGSNVDFTSAINQDTFS TVSQDTFSTPNLRNFYVQVYLQFLEQDANLVQESIYQEKTSYYPHLSFAGNWTGPQDLFRYYTGAIASEKIKFYLGFDYT ISTVNGWKFRTGGIGYINPDRDYYSQIFGNATKTFRISKNANFTLSTFFNYAIDRDTKIGSVVSNSPASALAARARLNWI KGSVGVTYYFGNVIPNSFENRLLLELSIRPLKTVTFGVTYSWAKVIPNSFEDRLLLKLSIRPLPTVTFSSFVAPIDKTSN SSPYGASVTWKLKNKYNSPTLSLNWQNQKHNYADDPFGNEIIVNDNNFTVMFRLSK >Mature_616_residues MESLTRDNIYTVDQKASYLQLRSVSLDRKVTTRTIEPKSLTGLEISMSLTADCIFPDTPNDQKCSYTPSIITDRNSIDSD FLVPTRISQTSQAGEIVKPETLAFMERPGFQAGTSTQPIGLELYFPNAGAFPGNTQSQKTQIERKEENNYTAFTINSRIR QVVKANDTEAVLGRTIQGFVFFDDENQGLNTTIQGVAQFLPDIIPDLKGSENPVNSRINRHLFLAPNNTRLPGNSYTIYS AGVGRAKSLTPDITSLSQVPKGSYHSIWLGLSPIIDRSINQGRTFYDPTSPQVATTSSGSEGGEGSNVDFTSAINQDTFS TVSQDTFSTPNLRNFYVQVYLQFLEQDANLVQESIYQEKTSYYPHLSFAGNWTGPQDLFRYYTGAIASEKIKFYLGFDYT ISTVNGWKFRTGGIGYINPDRDYYSQIFGNATKTFRISKNANFTLSTFFNYAIDRDTKIGSVVSNSPASALAARARLNWI KGSVGVTYYFGNVIPNSFENRLLLELSIRPLKTVTFGVTYSWAKVIPNSFEDRLLLKLSIRPLPTVTFSSFVAPIDKTSN SSPYGASVTWKLKNKYNSPTLSLNWQNQKHNYADDPFGNEIIVNDNNFTVMFRLSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68844; Mature: 68844
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLTRDNIYTVDQKASYLQLRSVSLDRKVTTRTIEPKSLTGLEISMSLTADCIFPDTPN CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEEEEECCCCCC DQKCSYTPSIITDRNSIDSDFLVPTRISQTSQAGEIVKPETLAFMERPGFQAGTSTQPIG CCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEE LELYFPNAGAFPGNTQSQKTQIERKEENNYTAFTINSRIRQVVKANDTEAVLGRTIQGFV EEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCHHHHCCEEEEEE FFDDENQGLNTTIQGVAQFLPDIIPDLKGSENPVNSRINRHLFLAPNNTRLPGNSYTIYS EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEE AGVGRAKSLTPDITSLSQVPKGSYHSIWLGLSPIIDRSINQGRTFYDPTSPQVATTSSGS CCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCEEECCCCCCEEECCCCC EGGEGSNVDFTSAINQDTFSTVSQDTFSTPNLRNFYVQVYLQFLEQDANLVQESIYQEKT CCCCCCCEEEHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYYPHLSFAGNWTGPQDLFRYYTGAIASEKIKFYLGFDYTISTVNGWKFRTGGIGYINPD CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECEEEEEECCEEEECCCEEEECCC RDYYSQIFGNATKTFRISKNANFTLSTFFNYAIDRDTKIGSVVSNSPASALAARARLNWI HHHHHHHHCCCCEEEEEECCCCEEEEEEEEHHCCCCCCCCHHHCCCCHHHHHHHHHHHEE KGSVGVTYYFGNVIPNSFENRLLLELSIRPLKTVTFGVTYSWAKVIPNSFEDRLLLKLSI ECCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEEEEHHHHCCCCCCCEEEEEEEC RPLPTVTFSSFVAPIDKTSNSSPYGASVTWKLKNKYNSPTLSLNWQNQKHNYADDPFGNE CCCCCEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCE IIVNDNNFTVMFRLSK EEEECCCEEEEEEECC >Mature Secondary Structure MESLTRDNIYTVDQKASYLQLRSVSLDRKVTTRTIEPKSLTGLEISMSLTADCIFPDTPN CCCCCCCCEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEEEEECCCCCC DQKCSYTPSIITDRNSIDSDFLVPTRISQTSQAGEIVKPETLAFMERPGFQAGTSTQPIG CCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEE LELYFPNAGAFPGNTQSQKTQIERKEENNYTAFTINSRIRQVVKANDTEAVLGRTIQGFV EEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCHHHHCCEEEEEE FFDDENQGLNTTIQGVAQFLPDIIPDLKGSENPVNSRINRHLFLAPNNTRLPGNSYTIYS EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEE AGVGRAKSLTPDITSLSQVPKGSYHSIWLGLSPIIDRSINQGRTFYDPTSPQVATTSSGS CCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCEEECCCCCCEEECCCCC EGGEGSNVDFTSAINQDTFSTVSQDTFSTPNLRNFYVQVYLQFLEQDANLVQESIYQEKT CCCCCCCEEEHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYYPHLSFAGNWTGPQDLFRYYTGAIASEKIKFYLGFDYTISTVNGWKFRTGGIGYINPD CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECEEEEEECCEEEECCCEEEECCC RDYYSQIFGNATKTFRISKNANFTLSTFFNYAIDRDTKIGSVVSNSPASALAARARLNWI HHHHHHHHCCCCEEEEEECCCCEEEEEEEEHHCCCCCCCCHHHCCCCHHHHHHHHHHHEE KGSVGVTYYFGNVIPNSFENRLLLELSIRPLKTVTFGVTYSWAKVIPNSFEDRLLLKLSI ECCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEEEEEHHHHCCCCCCCEEEEEEEC RPLPTVTFSSFVAPIDKTSNSSPYGASVTWKLKNKYNSPTLSLNWQNQKHNYADDPFGNE CCCCCEEHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCE IIVNDNNFTVMFRLSK EEEECCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA