Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474268
Identifier: 113474268
GI number: 113474268
Start: 603425
End: 603682
Strand: Direct
Name: 113474268
Synonym: Tery_0388
Alternate gene names: NA
Gene position: 603425-603682 (Clockwise)
Preceding gene: 113474267
Following gene: 113474269
Centisome position: 7.79
GC content: 41.09
Gene sequence:
>258_bases ATGAGCACCTTTTCCCAATTCACCCCTACCCTAACACTTAGCTATGCTATCATTTCCACTATTCTAACTACAGCATATTT AACTCCAGTATTAGCAGAAATTCCCAAATGGTCTACCTCAGCAACAGACCTCAAACCCCCATCAAAAAAATTAGCATCCG AAGCCAGCCCCACACCACCTTCATTAAAAAAAAACGAAAAATTCAACCACACCCTCAGACCCAAATTATATTATCCCGCC AAATATCGCTGCCGATAA
Upstream 100 bases:
>100_bases CGTTGCAGCAAATATATCCTTGACTTAAAGATCCAAGTTTTTTGAATTTCTTCAGCCAGCCCTAATTATAACCAATGCTA CCAAAGCCTCATCTAGGATA
Downstream 100 bases:
>100_bases AAAAATTAGCCCTATCACTACAAGTTTACCCCTCAACGATATCCTTATCAGTCACCTCACAAAATGGCAGTTTAGTAGTT CCCAAGCTTTTGCCAATACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 85; Mature: 84
Protein sequence:
>85_residues MSTFSQFTPTLTLSYAIISTILTTAYLTPVLAEIPKWSTSATDLKPPSKKLASEASPTPPSLKKNEKFNHTLRPKLYYPA KYRCR
Sequences:
>Translated_85_residues MSTFSQFTPTLTLSYAIISTILTTAYLTPVLAEIPKWSTSATDLKPPSKKLASEASPTPPSLKKNEKFNHTLRPKLYYPA KYRCR >Mature_84_residues STFSQFTPTLTLSYAIISTILTTAYLTPVLAEIPKWSTSATDLKPPSKKLASEASPTPPSLKKNEKFNHTLRPKLYYPAK YRCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9550; Mature: 9419
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFSQFTPTLTLSYAIISTILTTAYLTPVLAEIPKWSTSATDLKPPSKKLASEASPTPP CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCC SLKKNEKFNHTLRPKLYYPAKYRCR CCCCCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure STFSQFTPTLTLSYAIISTILTTAYLTPVLAEIPKWSTSATDLKPPSKKLASEASPTPP CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCC SLKKNEKFNHTLRPKLYYPAKYRCR CCCCCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA