| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474207
Identifier: 113474207
GI number: 113474207
Start: 495589
End: 496197
Strand: Direct
Name: 113474207
Synonym: Tery_0320
Alternate gene names: NA
Gene position: 495589-496197 (Clockwise)
Preceding gene: 113474206
Following gene: 113474208
Centisome position: 6.39
GC content: 31.2
Gene sequence:
>609_bases ATGCGACAAAAAGAACCATTTATTAAATACTGGAGTTTACCAGGTACATTAGTAATAAAAGGAGAATCTTTAGAAGCAGC AGCATACAGAATATTAGTGGAAAAAATTAGGGTTAAAAATCTATATTTAGAACAATTATATACTTTTTGCAGTCCTGATA GTGAGCCTAGAGAATCTATTGATAATTTTAAATATCTATCCGTCAGTTATTTTGCCCTAGTTAGATTTGAAGAGGCAGAA TTAATTGCTAATGGGGTGACAAGTATTTGTTGGTATCCCATTGATAAAATTCCTCAGTTAGCATTTGACCATCAAAAAAT TATTGAGTATGGATATTCCAGATTACGCAATAAACTTGAGTATAGTCCTATTGCTTTTGATGTTTTACCAGCAGAGTTTA CTTTAGGAGAATTATATCAACTTTATGCAACTATTTTAGGAAACAATTTTTCAGATTATTCTAATTTTCGTGCCAGACTA TTAAAGTTAGGTTTCTTATCTGAAACTGGCGTAAAAACATCACGAGGAGCTGGTAGACCTGCTAGTCTTTATCGGTTTGA TGTTAAAGCATTTGTTTTAGTAAAAGATAAGCCTTTAATGTTTATTTGA
Upstream 100 bases:
>100_bases CAGAGAAATTATAAATAATAAGGCAGACTTTAACGTAAGAGTAGATAATGTAATTTTTTCAGTTGACACCCAACAAAATC GTCTTTTAGTATTATTAATA
Downstream 100 bases:
>100_bases TAAGAATAGGGAATAGTTATAATGCTTTGAGGTTGAGTTATATTAAATTTGTTTGCTTCACGGTAATATAACTCTTTTTC CCAAAAGTATTTTTTGCTCC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: DNA Hydrolase; ADP-Ribose Pyrophosphatase; NUDIX Family Hydrolase; Nudix Hydrolase; MutT/Nudix Family Protein; Hydrolase NUDIX Family; Hydrolase NUDIX Family Protein; Hydrolase; Hydrolase MutT/Nudix Family Protein; NUDIX Domain-Containing Protein; DNA Hydrolase With MutT Domain-Containing Protein; Phosphohydrolase; MutT/NUDIX Family DNA Hydrolase; Nudix Hydrolase Family Protein; MutT/Nudix Family DNA Hydrolase; NTP Pyrophosphohydrolase; Hydrolase Nudix Family; Nudix Superfamily Hydrolase; Protein Containing NUDIX Domain; DNA Hydrolase Protein MutT/Nudix Family; Acetohydroxy Acid Isomeroreductase
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MRQKEPFIKYWSLPGTLVIKGESLEAAAYRILVEKIRVKNLYLEQLYTFCSPDSEPRESIDNFKYLSVSYFALVRFEEAE LIANGVTSICWYPIDKIPQLAFDHQKIIEYGYSRLRNKLEYSPIAFDVLPAEFTLGELYQLYATILGNNFSDYSNFRARL LKLGFLSETGVKTSRGAGRPASLYRFDVKAFVLVKDKPLMFI
Sequences:
>Translated_202_residues MRQKEPFIKYWSLPGTLVIKGESLEAAAYRILVEKIRVKNLYLEQLYTFCSPDSEPRESIDNFKYLSVSYFALVRFEEAE LIANGVTSICWYPIDKIPQLAFDHQKIIEYGYSRLRNKLEYSPIAFDVLPAEFTLGELYQLYATILGNNFSDYSNFRARL LKLGFLSETGVKTSRGAGRPASLYRFDVKAFVLVKDKPLMFI >Mature_202_residues MRQKEPFIKYWSLPGTLVIKGESLEAAAYRILVEKIRVKNLYLEQLYTFCSPDSEPRESIDNFKYLSVSYFALVRFEEAE LIANGVTSICWYPIDKIPQLAFDHQKIIEYGYSRLRNKLEYSPIAFDVLPAEFTLGELYQLYATILGNNFSDYSNFRARL LKLGFLSETGVKTSRGAGRPASLYRFDVKAFVLVKDKPLMFI
Specific function: Unknown
COG id: COG1051
COG function: function code F; ADP-ribose pyrophosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23361; Mature: 23361
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQKEPFIKYWSLPGTLVIKGESLEAAAYRILVEKIRVKNLYLEQLYTFCSPDSEPRESI CCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH DNFKYLSVSYFALVRFEEAELIANGVTSICWYPIDKIPQLAFDHQKIIEYGYSRLRNKLE CCCEEHEEEEEEEEEEHHHHHHHHCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC YSPIAFDVLPAEFTLGELYQLYATILGNNFSDYSNFRARLLKLGFLSETGVKTSRGAGRP CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ASLYRFDVKAFVLVKDKPLMFI CCEEEEEEEEEEEEECCCCCCC >Mature Secondary Structure MRQKEPFIKYWSLPGTLVIKGESLEAAAYRILVEKIRVKNLYLEQLYTFCSPDSEPRESI CCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH DNFKYLSVSYFALVRFEEAELIANGVTSICWYPIDKIPQLAFDHQKIIEYGYSRLRNKLE CCCEEHEEEEEEEEEEHHHHHHHHCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC YSPIAFDVLPAEFTLGELYQLYATILGNNFSDYSNFRARLLKLGFLSETGVKTSRGAGRP CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ASLYRFDVKAFVLVKDKPLMFI CCEEEEEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA