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The map label for this gene is yciR [C]

Identifier: 110835304

GI number: 110835304

Start: 2765710

End: 2767797

Strand: Reverse

Name: yciR [C]

Synonym: ABO_2443

Alternate gene names: 110835304

Gene position: 2767797-2765710 (Counterclockwise)

Preceding gene: 110835305

Following gene: 110835302

Centisome position: 88.71

GC content: 53.83

Gene sequence:

>2088_bases
ATGAGTCATCGCCCCATGAGCTATGCCCTGGATAATTTACGTCTTCTGATCGCCCATGAGTCACAGGATGAAGCTGAACA
GTTGATGAATAGCCTGCGCAACGCTGGCCGCGCAACCCGGGCGCAATTGGCGTTGGGTGAGGATGATCTGTTGCGGGCCT
TGAAAGGCGGTGCCTGGGAACTAATACTGTGTCGCCCCACGTTCGGCGATAGCAGTTTTGAAAATGCCATGAGTCACCTC
AATCGCTTGGGTAAAGCGATTCCCGTGATCCTTCTCGAAGATAATTTCAGTGCCGATACCATTAAAGTGGGCATGTCGTT
GGGTGCCCGTGGTGTCGTGCCAAATGATGATCGTGAATTGTTATCTCTGATGGTGGACAGAGTCATTGAGAATCTTCGTC
TGCGTAAAGAGCTGCAACATTCTGAAATTGCACTTCACGATGCCGAGAAGCGTCTGTCGCTGCTGATGGACCAGAGCCGT
GATGCCATCGCCTATGTGCTGGATGGCATGCATATTCACGCGAATGATAATTACGTTGAAATGTTTGGTTATGAGAGTGC
CGATGATTTGGCCGGCGTGCCGATTATGGATATGGTCTCGGCCTCGGACCATGCCAAACTTAAGCAGCTGCTGCGCAGCC
GCGCGCAAGATGAGAGCCAGACCCAGGAGCTGGAGTGTAAGGGAGTGAACACTGAGGGAGGCGAATTTGACGCCACCTTC
ACTTTTTCAGCCAGCACCTATGACGGTGAGGCTTGCACCCAAATCGTGATTCGCACCACGGGTGTGAATGAAAGCGAAAT
GGAAGAACGGCTCCAGGAAATGAGCCAGAAAGACCAAGTGACCGGGTTGTTCAGTCGCAGCTGGTTTATGGATCGCCTAG
ATGAAAGTGTGGCACTGGCCGCTAACGAAGGACGGCTGGCTACCGTGTTGTATTTGCGTCTGGATGACTTTGAGCATCAT
CAGTCTGAGTTGGGTATTGATGGCGCGGATGGCATCTTGAAAAGCGTGGCCGAATGGCTACGTGCGGAGGTGGGTGAGGC
ACGGTTGGCCAAAGTGGATGGTGAGGATTTTGCGATTTTGCAGCCGGTTGACGATACGGAGGAAGCGGCAGAGATGGCGG
AAAACCTGCGTGCGGGTATCGAAAGCCTGATGCCAGAAGTTGCCGCTAAGACCGTTCATGTTACTGCCAGTGTGGGAGTG
TCCTTTGTGCGTGAAGATGCTCGTAGCAGTCAGGGGATTCTCACCACCGCGCTGAAATGCTGTAATCAAGCCCAGCGTGA
AAACGGGGGCAAAGGCAGCAGTGTTAAGGTTCACGATCCCATGGATGACGTGGCAGCGGGTTCTTCCGAAGCGGTAACCA
TGCAGGTGCGCCAAGCGCTGGAACAGGCCAAATTTAGCTTGCGTTATCAGCCACTGGTGTGCCTGGAAGACCAATCCGAC
CATACCTTTGAAGTGTTCGTTAATTTGCCCCAGAAACAGGGTGATGACATGGAGGCGACAGAGTTTATGCCGGTGGCTGC
CGAGCAGGGTTTGGTGGGTAAAATCGACCGCTGGGTGGTGCTTAACGCCATGCGGGCAGCGTCGGTTTTCAGCGAACCGG
TAAATCTGGTGTTGAACCTTAACGGTGCCTCTCTGGCTGACGCGACCCTAGTCGATTGGCTAGCCAAGGCCATGCGCGCG
GCCAAGATGGACGGGTCTCGGGTGACTTTCCAGTTTAGCGAAGCAGATGCGGCCACTTACCTGAAACAGGCGGGCGCCTT
TGCCGAGAAGGTCAAAGCGTTGGGGTGTGGTATTTCTATTAGCCGTTTTGGTGGCGGGTTAGATCCGTTCAAGCTGTTCC
AGCATATTCCTGTCACCATGGTGAAGTTTGAAGGGTCCTTTACCCAGGAGCTGTCCAAGGCGGAAGGTCGTGAGCGTCTT
ACTGCCATCATTCAAAAGGTGAGAGAGGGCAACCGTAAAACCGTGGTTGGGTTTGTTGAGTCTGCGGCGCAGATGCAGGC
GTTGTGGACCTTGGGCGGTGTGGATTATTTGCAGGGGTATTACCTGCAGCCCCCCATGGATGTACTTGAGATTCCTGAGT
CGGCGTAA

Upstream 100 bases:

>100_bases
GAGTCGGATAACGGCTGCAGTGCGGCGTTTTTTCTGCACTCTCTTTGATGGTTGCCAAGGCAGGGTAGTCAGGCACAATG
GTGGGCCGTAAGAAAACTGT

Downstream 100 bases:

>100_bases
TGTATTGATAGCGGATAACGTGTGAAAAACGCTAAGACGATTGTGCAACGTAAGAGGCCGCGCCCAAAACATGGGCGCGG
CCTCTTACACTTATAGTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 694

Protein sequence:

>695_residues
MSHRPMSYALDNLRLLIAHESQDEAEQLMNSLRNAGRATRAQLALGEDDLLRALKGGAWELILCRPTFGDSSFENAMSHL
NRLGKAIPVILLEDNFSADTIKVGMSLGARGVVPNDDRELLSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSR
DAIAYVLDGMHIHANDNYVEMFGYESADDLAGVPIMDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEFDATF
TFSASTYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDESVALAANEGRLATVLYLRLDDFEHH
QSELGIDGADGILKSVAEWLRAEVGEARLAKVDGEDFAILQPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGV
SFVREDARSSQGILTTALKCCNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPLVCLEDQSD
HTFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSEPVNLVLNLNGASLADATLVDWLAKAMRA
AKMDGSRVTFQFSEADAATYLKQAGAFAEKVKALGCGISISRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERL
TAIIQKVREGNRKTVVGFVESAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPESA

Sequences:

>Translated_695_residues
MSHRPMSYALDNLRLLIAHESQDEAEQLMNSLRNAGRATRAQLALGEDDLLRALKGGAWELILCRPTFGDSSFENAMSHL
NRLGKAIPVILLEDNFSADTIKVGMSLGARGVVPNDDRELLSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSR
DAIAYVLDGMHIHANDNYVEMFGYESADDLAGVPIMDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEFDATF
TFSASTYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDESVALAANEGRLATVLYLRLDDFEHH
QSELGIDGADGILKSVAEWLRAEVGEARLAKVDGEDFAILQPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGV
SFVREDARSSQGILTTALKCCNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPLVCLEDQSD
HTFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSEPVNLVLNLNGASLADATLVDWLAKAMRA
AKMDGSRVTFQFSEADAATYLKQAGAFAEKVKALGCGISISRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERL
TAIIQKVREGNRKTVVGFVESAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPESA
>Mature_694_residues
SHRPMSYALDNLRLLIAHESQDEAEQLMNSLRNAGRATRAQLALGEDDLLRALKGGAWELILCRPTFGDSSFENAMSHLN
RLGKAIPVILLEDNFSADTIKVGMSLGARGVVPNDDRELLSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSRD
AIAYVLDGMHIHANDNYVEMFGYESADDLAGVPIMDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEFDATFT
FSASTYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDESVALAANEGRLATVLYLRLDDFEHHQ
SELGIDGADGILKSVAEWLRAEVGEARLAKVDGEDFAILQPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGVS
FVREDARSSQGILTTALKCCNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPLVCLEDQSDH
TFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSEPVNLVLNLNGASLADATLVDWLAKAMRAA
KMDGSRVTFQFSEADAATYLKQAGAFAEKVKALGCGISISRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERLT
AIIQKVREGNRKTVVGFVESAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPESA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=450, Percent_Identity=23.1111111111111, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=22.8110599078341, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1788849, Length=473, Percent_Identity=21.3530655391121, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76375; Mature: 76244

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRPMSYALDNLRLLIAHESQDEAEQLMNSLRNAGRATRAQLALGEDDLLRALKGGAWE
CCCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCEE
LILCRPTFGDSSFENAMSHLNRLGKAIPVILLEDNFSADTIKVGMSLGARGVVPNDDREL
EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECHHCCCCCCCCCCHHHH
LSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSRDAIAYVLDGMHIHANDNYVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCEEE
MFGYESADDLAGVPIMDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEFDATF
EECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHEEEECCCCCCCCEEEEE
TFSASTYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDESVALA
EEECCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
ANEGRLATVLYLRLDDFEHHQSELGIDGADGILKSVAEWLRAEVGEARLAKVDGEDFAIL
ECCCCEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
QPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGVSFVREDARSSQGILTTALKC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCCCHHHHHHHH
CNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPLVCLEDQSD
HHHHHHCCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
HTFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSEPVNLVLNL
CEEEEEEECCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEC
NGASLADATLVDWLAKAMRAAKMDGSRVTFQFSEADAATYLKQAGAFAEKVKALGCGISI
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCH
SRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERLTAIIQKVREGNRKTVVGFVE
HHCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
SAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPESA
HHHHHHHHHHHCCHHHHCCEECCCCHHHHCCCCCC
>Mature Secondary Structure 
SHRPMSYALDNLRLLIAHESQDEAEQLMNSLRNAGRATRAQLALGEDDLLRALKGGAWE
CCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCEE
LILCRPTFGDSSFENAMSHLNRLGKAIPVILLEDNFSADTIKVGMSLGARGVVPNDDREL
EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECHHCCCCCCCCCCHHHH
LSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSRDAIAYVLDGMHIHANDNYVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCEEE
MFGYESADDLAGVPIMDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEFDATF
EECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHEEEECCCCCCCCEEEEE
TFSASTYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDESVALA
EEECCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
ANEGRLATVLYLRLDDFEHHQSELGIDGADGILKSVAEWLRAEVGEARLAKVDGEDFAIL
ECCCCEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE
QPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGVSFVREDARSSQGILTTALKC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCCCHHHHHHHH
CNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPLVCLEDQSD
HHHHHHCCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
HTFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSEPVNLVLNL
CEEEEEEECCCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEC
NGASLADATLVDWLAKAMRAAKMDGSRVTFQFSEADAATYLKQAGAFAEKVKALGCGISI
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCH
SRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERLTAIIQKVREGNRKTVVGFVE
HHCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHH
SAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPESA
HHHHHHHHHHHCCHHHHCCEECCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]