| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835305
Identifier: 110835305
GI number: 110835305
Start: 2768054
End: 2769811
Strand: Reverse
Name: 110835305
Synonym: ABO_2444
Alternate gene names: NA
Gene position: 2769811-2768054 (Counterclockwise)
Preceding gene: 110835306
Following gene: 110835304
Centisome position: 88.77
GC content: 54.61
Gene sequence:
>1758_bases ATGGAGCAACCAGACCCGACGGTGCGATTGAAACTGCCTGAGCAGGATCTGCCGCACCTGACACTTGGCGCTGCTCAGCC GAAAAAGCTGGAACAGTGGGTTGAGTCTCTCCCAATCATGAATATGGGAGAAACTGCTCGCCAGTTGTATAAGTTTATTC AGGAACTTAACCGGCTCCAGATTGATTCCAAACTCCGCTTTCAGTTACTGGAAGTTGTGCGCCCATCGATTCTTCAAGTC AGCGAGTCGCTACAAAAACATTACCTGAACCAGTCACTGGTATTGCCCGAGAAGGCTCGTCGTGTGGCCAGCCTTGCCCA GGCCCTGCAAGGGCACCTAGCGAATGGTTATAAGCTGGTGGCGGTGCGAGGCATTCGTAAGATCAAGGACAAAGCCGTAA GGCGAGCGGTGGCAATTGCTATTCATCGGGCGGTAACGGCCCTAGGCGATACATTGTTGCGTTGCTACCAACTCTATTTG CCCAGCCCTAGCAATTTGTGGCTGGAGCTCCATCAACTGTTTCTGTTGGCTCAACAGCAGGGCATCAGTGGTATTGCAGT GTTGGATGGCGAAGTCGAAAGCAGTATTGAATCTGCTTATGCCCGTTGCCTATTACTGGCTACGGCAAAACCTAACCAGT TGCGCCAGCAGGAACTGGCGGGGATCTACAAGGCTGCATTCGCTTGGGCACCGCTGATTGAAATCAGCACTGCCAGTGAT GAGGATGACCTGTTCGTTTTTGATCTGCAGGCGGATCGCCCCCCCATTTATCGTACCCATGCGTCCCAGGCATCACAGAG CTGGCGTTATATTGATTCCTCTCGCTTGGTAGAAGCCATTGCTGGTTGGTTGGCCGCCTCTGATGAGAGCACGCTGATCG TTCCCAAAAGCCTGGATGAAAGGCTGCTTAACCACCTGCAGCAGGTGTGGGGAGCCTTGACCGAGCGGGCGTTTAAGCGG ATGCCGGAAAGCGGTGAAGTGGAGTTGTGTTTTGGTTTGGTGGGGGTGCATTACTTTCTGTCTAACAAAGTCGCTTTCGA AACGATTGTGGCGCGGGGCAGTCTGTCGATGTTGCGGTCTGAAGACGAGAGCAACCCCTTCCTGGCCAACATCAAGAAGA GCACTAAACAGAAACAGCAAAATGCGGACCCTTGGGCCACGGCCTATCAGTCCCATTATGCTGATGAAGCTATTGAGATG AACGTGAAGACGGGTGGGCAGCGTAAAGAAACGCCCTTGCCTGTGAGCTATCACTGCCAGAAAGTCAATGTGAGCCCGGG CGGCTATTGCCTGTCTTGGCAGGGCAATACACCGAGCCTGATGCGCACAGGAGAATTGCTGGCCCTGCGTGACTGCCCAG ACAGTGATTGGTCTGTGGCGGTGGTCCGCTGGGTGACGCAGTTGCCGAACTATGGTGCGCGCTTCGGCGTGGAGTTGTTG GCCCCAGGTGGGCGCCCTGTGGCCGCGCGTGCGCTGCGCAAGTTAGGGGTCGACAGTGACTATATGCGCGGTGTGATTCT GTCTGAACTGGCTGCTACTGGGCAGCCAGCAACCTTGTTGTTGCCTACGGTGGGCTTTAATGAGGGCATGAAAGTCGAGC TGCTGGAGGGAGAAGAGCTGCGTAGGGTGCAATTGCTGCGCAGTATCCAGAGCGTATCCGGGTTCAACCAGTATCCGTTT AAGGATCTGGCTACGCCGGCGCCGATTAATCCCTCGGAAGAGGATGATGCTCTAGACTTCATCTGGTCCAGTTTGTAG
Upstream 100 bases:
>100_bases ACAGTATCGTAGGGTAATGTGACATAGGGCACATAAGTAAAAATAATTAATATCAAATAATGACAGTGGCCGAGGTGTGG CCAAGATAAGGATTGCCTTC
Downstream 100 bases:
>100_bases GCGCAGGTGTGGAATCAGGCAATCTTATTGATAATTCGGCTTCACGGATTGTTGTCCATATCCGCTATTAGGGTAACAAC AACGATATTGTTGTCAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MEQPDPTVRLKLPEQDLPHLTLGAAQPKKLEQWVESLPIMNMGETARQLYKFIQELNRLQIDSKLRFQLLEVVRPSILQV SESLQKHYLNQSLVLPEKARRVASLAQALQGHLANGYKLVAVRGIRKIKDKAVRRAVAIAIHRAVTALGDTLLRCYQLYL PSPSNLWLELHQLFLLAQQQGISGIAVLDGEVESSIESAYARCLLLATAKPNQLRQQELAGIYKAAFAWAPLIEISTASD EDDLFVFDLQADRPPIYRTHASQASQSWRYIDSSRLVEAIAGWLAASDESTLIVPKSLDERLLNHLQQVWGALTERAFKR MPESGEVELCFGLVGVHYFLSNKVAFETIVARGSLSMLRSEDESNPFLANIKKSTKQKQQNADPWATAYQSHYADEAIEM NVKTGGQRKETPLPVSYHCQKVNVSPGGYCLSWQGNTPSLMRTGELLALRDCPDSDWSVAVVRWVTQLPNYGARFGVELL APGGRPVAARALRKLGVDSDYMRGVILSELAATGQPATLLLPTVGFNEGMKVELLEGEELRRVQLLRSIQSVSGFNQYPF KDLATPAPINPSEEDDALDFIWSSL
Sequences:
>Translated_585_residues MEQPDPTVRLKLPEQDLPHLTLGAAQPKKLEQWVESLPIMNMGETARQLYKFIQELNRLQIDSKLRFQLLEVVRPSILQV SESLQKHYLNQSLVLPEKARRVASLAQALQGHLANGYKLVAVRGIRKIKDKAVRRAVAIAIHRAVTALGDTLLRCYQLYL PSPSNLWLELHQLFLLAQQQGISGIAVLDGEVESSIESAYARCLLLATAKPNQLRQQELAGIYKAAFAWAPLIEISTASD EDDLFVFDLQADRPPIYRTHASQASQSWRYIDSSRLVEAIAGWLAASDESTLIVPKSLDERLLNHLQQVWGALTERAFKR MPESGEVELCFGLVGVHYFLSNKVAFETIVARGSLSMLRSEDESNPFLANIKKSTKQKQQNADPWATAYQSHYADEAIEM NVKTGGQRKETPLPVSYHCQKVNVSPGGYCLSWQGNTPSLMRTGELLALRDCPDSDWSVAVVRWVTQLPNYGARFGVELL APGGRPVAARALRKLGVDSDYMRGVILSELAATGQPATLLLPTVGFNEGMKVELLEGEELRRVQLLRSIQSVSGFNQYPF KDLATPAPINPSEEDDALDFIWSSL >Mature_585_residues MEQPDPTVRLKLPEQDLPHLTLGAAQPKKLEQWVESLPIMNMGETARQLYKFIQELNRLQIDSKLRFQLLEVVRPSILQV SESLQKHYLNQSLVLPEKARRVASLAQALQGHLANGYKLVAVRGIRKIKDKAVRRAVAIAIHRAVTALGDTLLRCYQLYL PSPSNLWLELHQLFLLAQQQGISGIAVLDGEVESSIESAYARCLLLATAKPNQLRQQELAGIYKAAFAWAPLIEISTASD EDDLFVFDLQADRPPIYRTHASQASQSWRYIDSSRLVEAIAGWLAASDESTLIVPKSLDERLLNHLQQVWGALTERAFKR MPESGEVELCFGLVGVHYFLSNKVAFETIVARGSLSMLRSEDESNPFLANIKKSTKQKQQNADPWATAYQSHYADEAIEM NVKTGGQRKETPLPVSYHCQKVNVSPGGYCLSWQGNTPSLMRTGELLALRDCPDSDWSVAVVRWVTQLPNYGARFGVELL APGGRPVAARALRKLGVDSDYMRGVILSELAATGQPATLLLPTVGFNEGMKVELLEGEELRRVQLLRSIQSVSGFNQYPF KDLATPAPINPSEEDDALDFIWSSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65205; Mature: 65205
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQPDPTVRLKLPEQDLPHLTLGAAQPKKLEQWVESLPIMNMGETARQLYKFIQELNRLQ CCCCCCCEEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC IDSKLRFQLLEVVRPSILQVSESLQKHYLNQSLVLPEKARRVASLAQALQGHLANGYKLV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE AVRGIRKIKDKAVRRAVAIAIHRAVTALGDTLLRCYQLYLPSPSNLWLELHQLFLLAQQQ EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GISGIAVLDGEVESSIESAYARCLLLATAKPNQLRQQELAGIYKAAFAWAPLIEISTASD CCCEEEEECCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC EDDLFVFDLQADRPPIYRTHASQASQSWRYIDSSRLVEAIAGWLAASDESTLIVPKSLDE CCCEEEEEECCCCCCCEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCHHHH RLLNHLQQVWGALTERAFKRMPESGEVELCFGLVGVHYFLSNKVAFETIVARGSLSMLRS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHC EDESNPFLANIKKSTKQKQQNADPWATAYQSHYADEAIEMNVKTGGQRKETPLPVSYHCQ CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCEEEEE KVNVSPGGYCLSWQGNTPSLMRTGELLALRDCPDSDWSVAVVRWVTQLPNYGARFGVELL EEECCCCCEEEEECCCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEE APGGRPVAARALRKLGVDSDYMRGVILSELAATGQPATLLLPTVGFNEGMKVELLEGEEL CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCHHH RRVQLLRSIQSVSGFNQYPFKDLATPAPINPSEEDDALDFIWSSL HHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MEQPDPTVRLKLPEQDLPHLTLGAAQPKKLEQWVESLPIMNMGETARQLYKFIQELNRLQ CCCCCCCEEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC IDSKLRFQLLEVVRPSILQVSESLQKHYLNQSLVLPEKARRVASLAQALQGHLANGYKLV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE AVRGIRKIKDKAVRRAVAIAIHRAVTALGDTLLRCYQLYLPSPSNLWLELHQLFLLAQQQ EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC GISGIAVLDGEVESSIESAYARCLLLATAKPNQLRQQELAGIYKAAFAWAPLIEISTASD CCCEEEEECCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC EDDLFVFDLQADRPPIYRTHASQASQSWRYIDSSRLVEAIAGWLAASDESTLIVPKSLDE CCCEEEEEECCCCCCCEECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCHHHH RLLNHLQQVWGALTERAFKRMPESGEVELCFGLVGVHYFLSNKVAFETIVARGSLSMLRS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHC EDESNPFLANIKKSTKQKQQNADPWATAYQSHYADEAIEMNVKTGGQRKETPLPVSYHCQ CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCEEEEE KVNVSPGGYCLSWQGNTPSLMRTGELLALRDCPDSDWSVAVVRWVTQLPNYGARFGVELL EEECCCCCEEEEECCCCCCHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEE APGGRPVAARALRKLGVDSDYMRGVILSELAATGQPATLLLPTVGFNEGMKVELLEGEEL CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCHHH RRVQLLRSIQSVSGFNQYPFKDLATPAPINPSEEDDALDFIWSSL HHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA