| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835287
Identifier: 110835287
GI number: 110835287
Start: 2746229
End: 2747185
Strand: Reverse
Name: 110835287
Synonym: ABO_2426
Alternate gene names: NA
Gene position: 2747185-2746229 (Counterclockwise)
Preceding gene: 110835288
Following gene: 110835286
Centisome position: 88.05
GC content: 55.8
Gene sequence:
>957_bases ATGCCCTTCCAGCCTTATGCCGATCTCGGCCAGCATATCACCCGTATTGATACCGCCTTGATGCGCGATGGGCTGGCGGC CTGTTATCTGCTCCAGGGCGGTGATGAGTACGCCATCATCGAGACGGGCACGCATAATACCGTACCGATTATTCTCGCCC TGCTGGAACAGCGGGAGATCGAGCGTGAACAGGTCAAGTTCGTGATTCCCACCCATGTGCATCTTGACCATGCGGGGGGC GTAGGAGGGTCGATGCAGGCGTTGCCGGTCGCCACCTTGTTGATTCATCCCCGTGGCGCCCGGCACATGATTGACCCTTC CAAGCTCAAGGCGGGGGCCATCGCGGTATACGGTGAAGACGCCTTTGCCAAAACCTATGGCGATGTGATTCCCGTGCAGG CTGACCGTGTGCGAGAGATGAACGAAGGTGACCATGTTCTGGTCGGTGACCGGCGCCTGGACTTTTACGATACCCCAGGT CATGCCCGTCATCATTTCTGTGTTTTTGATTCGCTTTCTTGCGGTATTTTTACCGGTGATACCTTTGGTTTGTCTTACCC GCCACTGACTACCGAAAAAGGTCCCTTCATTTTACCCACCACCACCCCGGTGCAGTTCGATCCGGACGCATTGAAACTGT CGATTCGTAAATTACTGGCACTGAATCCCAAGCGCATGTTCCTGACCCATTACGGTGTGCTGGAGACGCCTCAGGAGCCG GGGGAGCGTTTACTGGCTATGGTGGATGATTACGTGGCATTGGCAAAAAAAGCGGCACCGGGCGATGACGCGACCTTGCT GCAACGGCTGGAGGCGGCGATGCGAGCGTATATGTTCGACAAAGCCCGTGACCATGGTGTGTCGCTATCGGATGAAGCCC TGCAAGATGCGTTGGGGTTTGATATTAATCTCAACAGCCAGGGGTTGATGGTATGGCTTGGGCAGCAAGCGGATTGA
Upstream 100 bases:
>100_bases GGTGTCAGGCAAGCTTGGCGATTGCGACTAGGGTCGAATGCAAGTGGCCTGCCTCTTCCTCTATAGTCAGGGCTGCCATT GACCTGCAAGGAGTTGCTTC
Downstream 100 bases:
>100_bases TTCATTCAGCTGAAAAAATGGATCGCATGATTGCCCTTGTTCACTTGCACGCTGCTGGCCATAGTAGCGGCATTGATTCT CTTTAGGAGCCCGCATGTCT
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Zn-Dependent Hydrolase; Beta-Lactamase-Like; Beta-Lactamase Related Protein; Metallo-Beta-Lactamase Family Hydrolase; Metallo-Beta-Lactamase-Related Protein; Zn-Dependent Hydrolase Including Glyoxylase; Zn-Dependent Hydrolase Glyoxylase; Metallo-Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Zinc-Dependant Hydrolase; Metallo-Beta-Lactamase Related Protein; Metallo Beta-Lactamase Protein; Metallo-Beta-Lactamase Domain Protein; Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MPFQPYADLGQHITRIDTALMRDGLAACYLLQGGDEYAIIETGTHNTVPIILALLEQREIEREQVKFVIPTHVHLDHAGG VGGSMQALPVATLLIHPRGARHMIDPSKLKAGAIAVYGEDAFAKTYGDVIPVQADRVREMNEGDHVLVGDRRLDFYDTPG HARHHFCVFDSLSCGIFTGDTFGLSYPPLTTEKGPFILPTTTPVQFDPDALKLSIRKLLALNPKRMFLTHYGVLETPQEP GERLLAMVDDYVALAKKAAPGDDATLLQRLEAAMRAYMFDKARDHGVSLSDEALQDALGFDINLNSQGLMVWLGQQAD
Sequences:
>Translated_318_residues MPFQPYADLGQHITRIDTALMRDGLAACYLLQGGDEYAIIETGTHNTVPIILALLEQREIEREQVKFVIPTHVHLDHAGG VGGSMQALPVATLLIHPRGARHMIDPSKLKAGAIAVYGEDAFAKTYGDVIPVQADRVREMNEGDHVLVGDRRLDFYDTPG HARHHFCVFDSLSCGIFTGDTFGLSYPPLTTEKGPFILPTTTPVQFDPDALKLSIRKLLALNPKRMFLTHYGVLETPQEP GERLLAMVDDYVALAKKAAPGDDATLLQRLEAAMRAYMFDKARDHGVSLSDEALQDALGFDINLNSQGLMVWLGQQAD >Mature_317_residues PFQPYADLGQHITRIDTALMRDGLAACYLLQGGDEYAIIETGTHNTVPIILALLEQREIEREQVKFVIPTHVHLDHAGGV GGSMQALPVATLLIHPRGARHMIDPSKLKAGAIAVYGEDAFAKTYGDVIPVQADRVREMNEGDHVLVGDRRLDFYDTPGH ARHHFCVFDSLSCGIFTGDTFGLSYPPLTTEKGPFILPTTTPVQFDPDALKLSIRKLLALNPKRMFLTHYGVLETPQEPG ERLLAMVDDYVALAKKAAPGDDATLLQRLEAAMRAYMFDKARDHGVSLSDEALQDALGFDINLNSQGLMVWLGQQAD
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34986; Mature: 34855
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFQPYADLGQHITRIDTALMRDGLAACYLLQGGDEYAIIETGTHNTVPIILALLEQREI CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHC EREQVKFVIPTHVHLDHAGGVGGSMQALPVATLLIHPRGARHMIDPSKLKAGAIAVYGED CHHHEEEEECCEEEEECCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHCCCEEEEECCC AFAKTYGDVIPVQADRVREMNEGDHVLVGDRRLDFYDTPGHARHHFCVFDSLSCGIFTGD HHHHHHCCEECCCHHHHHHCCCCCEEEEECCEEEEECCCCCCCEEEEEEECCCCCEEECC TFGLSYPPLTTEKGPFILPTTTPVQFDPDALKLSIRKLLALNPKRMFLTHYGVLETPQEP CCCCCCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH GERLLAMVDDYVALAKKAAPGDDATLLQRLEAAMRAYMFDKARDHGVSLSDEALQDALGF HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC DINLNSQGLMVWLGQQAD EEEECCCCEEEEECCCCC >Mature Secondary Structure PFQPYADLGQHITRIDTALMRDGLAACYLLQGGDEYAIIETGTHNTVPIILALLEQREI CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHC EREQVKFVIPTHVHLDHAGGVGGSMQALPVATLLIHPRGARHMIDPSKLKAGAIAVYGED CHHHEEEEECCEEEEECCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHCCCEEEEECCC AFAKTYGDVIPVQADRVREMNEGDHVLVGDRRLDFYDTPGHARHHFCVFDSLSCGIFTGD HHHHHHCCEECCCHHHHHHCCCCCEEEEECCEEEEECCCCCCCEEEEEEECCCCCEEECC TFGLSYPPLTTEKGPFILPTTTPVQFDPDALKLSIRKLLALNPKRMFLTHYGVLETPQEP CCCCCCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH GERLLAMVDDYVALAKKAAPGDDATLLQRLEAAMRAYMFDKARDHGVSLSDEALQDALGF HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC DINLNSQGLMVWLGQQAD EEEECCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA