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The map label for this gene is ywbI [H]

Identifier: 110835288

GI number: 110835288

Start: 2747287

End: 2748177

Strand: Reverse

Name: ywbI [H]

Synonym: ABO_2427

Alternate gene names: 110835288

Gene position: 2748177-2747287 (Counterclockwise)

Preceding gene: 110835290

Following gene: 110835287

Centisome position: 88.08

GC content: 54.99

Gene sequence:

>891_bases
ATGATCAGCCCTCAATGGTTGCGTTCTTTTGTGGTGTTAGCGGAGCGGGGCAGTTTCACTCGTACGGCAGACCAGCTGGG
GCTGACTCAGGCGGCGGTCAGCCAGCATATTCGACACCTGGAAGAGACCTTGGGGCCGCTGTTGATTCGCCGGCCTCGCC
AGATTGAGCTGACGCCGGCAGGTCAGGCACTGCTGATGTATTGCGCAGACCTGGAGCAGGCAGAAAAACGGCTAAATTTG
CGCTTGTCCGGGGAGGATGATCGGCAGGGTGAAATCAGCCTGATCAGCCCCGGCAGCATTGGTTTGTCTCTGTATCCTTT
GCTGCTGGATTTGCAGGCCTTATACCCTGGTTTGACGATGCGTCATCGTTTTGCTCCCGATCATGATGTTCTTAAGGCTG
TGGGAAATAATGACTTTGAGTTAGGTCTGGTTACCATCAAGCCAGACGACCCGCGACTGGCGGCGTGTCTTTTTGCGCAG
GAACCACTGGATTTGGTCGTACCAGCTAAAGTTATGGTGAGTTGTTGGGAAGATCTTGAAAACCTAGGGTTTATTGATCA
TCCGGATGGGCAGGCCATGGCGTCACGGCTATTGAGCAGAGTCTTTCCGGGAAATCGCGGCATTCGCAGTATTGCGTGCA
AGGGGTTTGTGAATCAGATTGGTTTGATTCTGGATCCAGTGGCGCGGGGGTTTGGTTTTACAGTGCTTCCACGCTATGCC
CGCGAAGCCTATGCCTGGCCTGATGCAATTCGGGTGGTGGAAATGGACCCTCGTGTGGTCGATTCATTGTGGCTGATTTA
TCGTGCGCAATGGACGCTGTCGGCCCGCGCCCGGTTTGTGGCGAGCGAGTTGGCTTCCCGTTTAACGGGGAAGACGCTGG
AGCTGGTGTAG

Upstream 100 bases:

>100_bases
CATGGCTGGTGGCGATTGCGGCTACGGCATGAGGAAAGCCTAAAAGGGTTGTGTTATAAGATAAATGGAGCTCATCTTAT
TGCCTCGATAAGGTTTACTT

Downstream 100 bases:

>100_bases
CGGTGTCAGGCAAGCTTGGCGATTGCGACTAGGGTCGAATGCAAGTGGCCTGCCTCTTCCTCTATAGTCAGGGCTGCCAT
TGACCTGCAAGGAGTTGCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MISPQWLRSFVVLAERGSFTRTADQLGLTQAAVSQHIRHLEETLGPLLIRRPRQIELTPAGQALLMYCADLEQAEKRLNL
RLSGEDDRQGEISLISPGSIGLSLYPLLLDLQALYPGLTMRHRFAPDHDVLKAVGNNDFELGLVTIKPDDPRLAACLFAQ
EPLDLVVPAKVMVSCWEDLENLGFIDHPDGQAMASRLLSRVFPGNRGIRSIACKGFVNQIGLILDPVARGFGFTVLPRYA
REAYAWPDAIRVVEMDPRVVDSLWLIYRAQWTLSARARFVASELASRLTGKTLELV

Sequences:

>Translated_296_residues
MISPQWLRSFVVLAERGSFTRTADQLGLTQAAVSQHIRHLEETLGPLLIRRPRQIELTPAGQALLMYCADLEQAEKRLNL
RLSGEDDRQGEISLISPGSIGLSLYPLLLDLQALYPGLTMRHRFAPDHDVLKAVGNNDFELGLVTIKPDDPRLAACLFAQ
EPLDLVVPAKVMVSCWEDLENLGFIDHPDGQAMASRLLSRVFPGNRGIRSIACKGFVNQIGLILDPVARGFGFTVLPRYA
REAYAWPDAIRVVEMDPRVVDSLWLIYRAQWTLSARARFVASELASRLTGKTLELV
>Mature_296_residues
MISPQWLRSFVVLAERGSFTRTADQLGLTQAAVSQHIRHLEETLGPLLIRRPRQIELTPAGQALLMYCADLEQAEKRLNL
RLSGEDDRQGEISLISPGSIGLSLYPLLLDLQALYPGLTMRHRFAPDHDVLKAVGNNDFELGLVTIKPDDPRLAACLFAQ
EPLDLVVPAKVMVSCWEDLENLGFIDHPDGQAMASRLLSRVFPGNRGIRSIACKGFVNQIGLILDPVARGFGFTVLPRYA
REAYAWPDAIRVVEMDPRVVDSLWLIYRAQWTLSARARFVASELASRLTGKTLELV

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=163, Percent_Identity=33.1288343558282, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=99, Percent_Identity=40.4040404040404, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32995; Mature: 32995

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPQWLRSFVVLAERGSFTRTADQLGLTQAAVSQHIRHLEETLGPLLIRRPRQIELTPA
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GQALLMYCADLEQAEKRLNLRLSGEDDRQGEISLISPGSIGLSLYPLLLDLQALYPGLTM
CHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCE
RHRFAPDHDVLKAVGNNDFELGLVTIKPDDPRLAACLFAQEPLDLVVPAKVMVSCWEDLE
ECCCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHH
NLGFIDHPDGQAMASRLLSRVFPGNRGIRSIACKGFVNQIGLILDPVARGFGFTVLPRYA
HCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
REAYAWPDAIRVVEMDPRVVDSLWLIYRAQWTLSARARFVASELASRLTGKTLELV
HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MISPQWLRSFVVLAERGSFTRTADQLGLTQAAVSQHIRHLEETLGPLLIRRPRQIELTPA
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GQALLMYCADLEQAEKRLNLRLSGEDDRQGEISLISPGSIGLSLYPLLLDLQALYPGLTM
CHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCE
RHRFAPDHDVLKAVGNNDFELGLVTIKPDDPRLAACLFAQEPLDLVVPAKVMVSCWEDLE
ECCCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHH
NLGFIDHPDGQAMASRLLSRVFPGNRGIRSIACKGFVNQIGLILDPVARGFGFTVLPRYA
HCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
REAYAWPDAIRVVEMDPRVVDSLWLIYRAQWTLSARARFVASELASRLTGKTLELV
HHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]