| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yghU [H]
Identifier: 110835286
GI number: 110835286
Start: 2745268
End: 2746134
Strand: Reverse
Name: yghU [H]
Synonym: ABO_2425
Alternate gene names: 110835286
Gene position: 2746134-2745268 (Counterclockwise)
Preceding gene: 110835287
Following gene: 110835283
Centisome position: 88.01
GC content: 56.29
Gene sequence:
>867_bases ATGTCTGACGATACCTACACCCCGCCTCGGGTCTGGAAATGGGACCAGGAAAACGGTGGCAAATTCGCCAATATTAATCG TCCTATTGCCGGCCCCACCCACGACCAAGCACTGCCGGTTGGTGAGCACCCTTTGCAGCTTTATTCGCTAGCCACCCCCA ACGGGGTGAAAGTCACCGTGATGCTGGAAGAACTGCTGGAAAAGGGGCACACCGGTGCGCAGTACGATGCTTGGATGATC AAGATTACGGAGGGTGATCAGTTCGGCAGTGGCTTTGTGGAGGTGAATCCAAATTCCAAGATTCCCGCGCTGATGGACCA TAGCGTCAATCCGCCCCAGCGGGTGTTCGAGTCCGGCAGTATTCTGCTTTATTTGGCGGAAAAGTTTGGTGCCTTTTTGC CCAGGGAGCTGGCGACCCGCACCGAAACCCTGAGCTGGCTGTTCTGGCAGATGGGCAGTGCGCCGCTACTGGGGGGCGGT TTCGGCCATTTCTATGCCTACGCGCCGGAAAAGTATCAATACCCCATCGACCGTTACACCATGGAGATCAAGCGTCAGCT GGATGTATTGGACCGGCGTTTGGCGGATAACGAATACCTGGCCGGTGATGAATACACCATCGCGGATATGGCGGTGTGGC CCTGGTACGGCGCTCTGGTGACTAACAAAGTGTATGAAGCGGCGGAGTTTATTGAAGCCCACACTTACACCAATGTACTG CGCTGGACTAACCAAATCGGTGAGCGTCCGGCAGTAAAGCGTGGCCTCATGGTGAACCGGGCCTGGGGCGAGCCGTCCAG CCAGTTGCATGAGCGTCACGATGCTAGCGACTTCGAGTTGAAAACGCAGGACAAAGTGCAGGGCTGA
Upstream 100 bases:
>100_bases GATTGATTCATTCAGCTGAAAAAATGGATCGCATGATTGCCCTTGTTCACTTGCACGCTGCTGGCCATAGTAGCGGCATT GATTCTCTTTAGGAGCCCGC
Downstream 100 bases:
>100_bases TGGTGTTCATCGAGCGCTGAATGTCGGATTACGCTCAGCTGTAATCCGACAGAATGCTAAGACGCTGCCTCGTTCAGGTG CCACAAAAAGTCTGGTGGAC
Product: glutathione S-transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSDDTYTPPRVWKWDQENGGKFANINRPIAGPTHDQALPVGEHPLQLYSLATPNGVKVTVMLEELLEKGHTGAQYDAWMI KITEGDQFGSGFVEVNPNSKIPALMDHSVNPPQRVFESGSILLYLAEKFGAFLPRELATRTETLSWLFWQMGSAPLLGGG FGHFYAYAPEKYQYPIDRYTMEIKRQLDVLDRRLADNEYLAGDEYTIADMAVWPWYGALVTNKVYEAAEFIEAHTYTNVL RWTNQIGERPAVKRGLMVNRAWGEPSSQLHERHDASDFELKTQDKVQG
Sequences:
>Translated_288_residues MSDDTYTPPRVWKWDQENGGKFANINRPIAGPTHDQALPVGEHPLQLYSLATPNGVKVTVMLEELLEKGHTGAQYDAWMI KITEGDQFGSGFVEVNPNSKIPALMDHSVNPPQRVFESGSILLYLAEKFGAFLPRELATRTETLSWLFWQMGSAPLLGGG FGHFYAYAPEKYQYPIDRYTMEIKRQLDVLDRRLADNEYLAGDEYTIADMAVWPWYGALVTNKVYEAAEFIEAHTYTNVL RWTNQIGERPAVKRGLMVNRAWGEPSSQLHERHDASDFELKTQDKVQG >Mature_287_residues SDDTYTPPRVWKWDQENGGKFANINRPIAGPTHDQALPVGEHPLQLYSLATPNGVKVTVMLEELLEKGHTGAQYDAWMIK ITEGDQFGSGFVEVNPNSKIPALMDHSVNPPQRVFESGSILLYLAEKFGAFLPRELATRTETLSWLFWQMGSAPLLGGGF GHFYAYAPEKYQYPIDRYTMEIKRQLDVLDRRLADNEYLAGDEYTIADMAVWPWYGALVTNKVYEAAEFIEAHTYTNVLR WTNQIGERPAVKRGLMVNRAWGEPSSQLHERHDASDFELKTQDKVQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI87082195, Length=288, Percent_Identity=69.0972222222222, Blast_Score=430, Evalue=1e-122, Organism=Escherichia coli, GI1788640, Length=219, Percent_Identity=41.5525114155251, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI87081789, Length=189, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324100, Length=258, Percent_Identity=29.8449612403101, Blast_Score=105, Evalue=8e-24, Organism=Drosophila melanogaster, GI17864592, Length=209, Percent_Identity=28.2296650717703, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI28571670, Length=178, Percent_Identity=27.5280898876405, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI45549270, Length=200, Percent_Identity=27, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI17864594, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: NA
Molecular weight: Translated: 32716; Mature: 32585
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDTYTPPRVWKWDQENGGKFANINRPIAGPTHDQALPVGEHPLQLYSLATPNGVKVTV CCCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEE MLEELLEKGHTGAQYDAWMIKITEGDQFGSGFVEVNPNSKIPALMDHSVNPPQRVFESGS EHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHCCCC ILLYLAEKFGAFLPRELATRTETLSWLFWQMGSAPLLGGGFGHFYAYAPEKYQYPIDRYT EEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHEEECCCHHCCCHHHHH MEIKRQLDVLDRRLADNEYLAGDEYTIADMAVWPWYGALVTNKVYEAAEFIEAHTYTNVL HHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH RWTNQIGERPAVKRGLMVNRAWGEPSSQLHERHDASDFELKTQDKVQG HHHHHHCCCHHHHHCCEEEECCCCCHHHHHHHCCCCCCEECCHHCCCC >Mature Secondary Structure SDDTYTPPRVWKWDQENGGKFANINRPIAGPTHDQALPVGEHPLQLYSLATPNGVKVTV CCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEE MLEELLEKGHTGAQYDAWMIKITEGDQFGSGFVEVNPNSKIPALMDHSVNPPQRVFESGS EHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHCCCC ILLYLAEKFGAFLPRELATRTETLSWLFWQMGSAPLLGGGFGHFYAYAPEKYQYPIDRYT EEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHEEECCCHHCCCHHHHH MEIKRQLDVLDRRLADNEYLAGDEYTIADMAVWPWYGALVTNKVYEAAEFIEAHTYTNVL HHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH RWTNQIGERPAVKRGLMVNRAWGEPSSQLHERHDASDFELKTQDKVQG HHHHHHCCCHHHHHCCEEEECCCCCHHHHHHHCCCCCCEECCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]