| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is murI [H]
Identifier: 110835225
GI number: 110835225
Start: 2687933
End: 2688724
Strand: Direct
Name: murI [H]
Synonym: ABO_2364
Alternate gene names: 110835225
Gene position: 2687933-2688724 (Clockwise)
Preceding gene: 110835224
Following gene: 110835234
Centisome position: 86.15
GC content: 55.93
Gene sequence:
>792_bases ATGACCCACCCCGGCCCCATTGGCGTCTTCGACTCTGGCATCGGCGGCTTGTCCATCGCCCGCCGCATTCGCGAACTGCT GCCCCACGAAAACCTGCTCTATGTGGCGGACTCTGTTCATGCGCCCTACGGAGAAAAGGCCGAGCATTACATTCAGCAAC GGGCAGATACGATTACCCGGTTTCTCATAGACAATAACGCGAAAGCCATCGTGGTGGCCTGCAATACCGCCACCGTCTCG GCTATTCGGCAGCTGCGTGCCGATTACACCCTGCCCATCATCGGCGTGGAACCAGGCATTAAACCCGCCGCCCTGAAAAG CAAAAGTGGCGTTATCGGGGTACTGGCCACCAGTCAGACCCTAAAAAGCGAGTCCTTCAACAATTTGAGCCGGCTATTCT CAGAAAGTGTATGTGTGGAAATCCAGCCCTGCCCCGGGCTGGTTGAACAAATTGAAGTGCTCGATTTGGACAGTGAAAAA ACACAAGCACTGGTGGCCCGCTATGTGGCCCCACTGATTGAAAAAGGCGCAGATCATATTGTCCTGGGCTGTACGCATTA TGCGTTTTTGGCACCGGTGATTCGTCGCATTGCTGGGGCGGGAATCCAGGTCGTTAACACCGACATAGCCGTGGCCCGAG AGACCCTTCGGCGCCTGCAAAACGCTAACCGCCTTTCTACCAGCGTGGCCCCCGGGCAAATGGCATTCTGGAGCAGTGCG GCCAACGAACTGGCGGATCAACAAATTAAACGCTTGTGGGACGGCAGCGTAACGATAAACACGATGCGCTAA
Upstream 100 bases:
>100_bases TTTTTACCGCTCTACGGCGGCAACAGGTTGGCACTGCAGGCCTCCTACATCGTCCCGTCTTGGTATATCCTTGGCTCTTC GCTCCCACCCGAATATCCGT
Downstream 100 bases:
>100_bases TCGGTGTATTGCTCGAATCTTTAGGCAACGAAACGTTACTGAAAAAATACAGGGCGCCCGGTTTGGCGCTGAGAAAAAGT CAGGCACGCTATTCGAGCTA
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MTHPGPIGVFDSGIGGLSIARRIRELLPHENLLYVADSVHAPYGEKAEHYIQQRADTITRFLIDNNAKAIVVACNTATVS AIRQLRADYTLPIIGVEPGIKPAALKSKSGVIGVLATSQTLKSESFNNLSRLFSESVCVEIQPCPGLVEQIEVLDLDSEK TQALVARYVAPLIEKGADHIVLGCTHYAFLAPVIRRIAGAGIQVVNTDIAVARETLRRLQNANRLSTSVAPGQMAFWSSA ANELADQQIKRLWDGSVTINTMR
Sequences:
>Translated_263_residues MTHPGPIGVFDSGIGGLSIARRIRELLPHENLLYVADSVHAPYGEKAEHYIQQRADTITRFLIDNNAKAIVVACNTATVS AIRQLRADYTLPIIGVEPGIKPAALKSKSGVIGVLATSQTLKSESFNNLSRLFSESVCVEIQPCPGLVEQIEVLDLDSEK TQALVARYVAPLIEKGADHIVLGCTHYAFLAPVIRRIAGAGIQVVNTDIAVARETLRRLQNANRLSTSVAPGQMAFWSSA ANELADQQIKRLWDGSVTINTMR >Mature_262_residues THPGPIGVFDSGIGGLSIARRIRELLPHENLLYVADSVHAPYGEKAEHYIQQRADTITRFLIDNNAKAIVVACNTATVSA IRQLRADYTLPIIGVEPGIKPAALKSKSGVIGVLATSQTLKSESFNNLSRLFSESVCVEIQPCPGLVEQIEVLDLDSEKT QALVARYVAPLIEKGADHIVLGCTHYAFLAPVIRRIAGAGIQVVNTDIAVARETLRRLQNANRLSTSVAPGQMAFWSSAA NELADQQIKRLWDGSVTINTMR
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=224, Percent_Identity=34.375, Blast_Score=122, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 28521; Mature: 28390
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: PS00923 ASP_GLU_RACEMASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPGPIGVFDSGIGGLSIARRIRELLPHENLLYVADSVHAPYGEKAEHYIQQRADTITR CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH FLIDNNAKAIVVACNTATVSAIRQLRADYTLPIIGVEPGIKPAALKSKSGVIGVLATSQT HHCCCCCCEEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCEEEEEECCHH LKSESFNNLSRLFSESVCVEIQPCPGLVEQIEVLDLDSEKTQALVARYVAPLIEKGADHI HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEE VLGCTHYAFLAPVIRRIAGAGIQVVNTDIAVARETLRRLQNANRLSTSVAPGQMAFWSSA EEEHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHH ANELADQQIKRLWDGSVTINTMR HHHHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure THPGPIGVFDSGIGGLSIARRIRELLPHENLLYVADSVHAPYGEKAEHYIQQRADTITR CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH FLIDNNAKAIVVACNTATVSAIRQLRADYTLPIIGVEPGIKPAALKSKSGVIGVLATSQT HHCCCCCCEEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCEEEEEECCHH LKSESFNNLSRLFSESVCVEIQPCPGLVEQIEVLDLDSEKTQALVARYVAPLIEKGADHI HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEE VLGCTHYAFLAPVIRRIAGAGIQVVNTDIAVARETLRRLQNANRLSTSVAPGQMAFWSSA EEEHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHH ANELADQQIKRLWDGSVTINTMR HHHHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA