| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835234
Identifier: 110835234
GI number: 110835234
Start: 2697526
End: 2698446
Strand: Direct
Name: 110835234
Synonym: ABO_2373
Alternate gene names: NA
Gene position: 2697526-2698446 (Clockwise)
Preceding gene: 110835225
Following gene: 110835235
Centisome position: 86.46
GC content: 55.05
Gene sequence:
>921_bases ATGCGAATTCTGACTCTGGCCACCGCATCCTTAGCCACCATTCTGACAGGTTGCGGAGGCTCAAGTTCATCGGGCGACCG TGCTTGGGAGAGCAGCAGATCCAGCACCGCTCGCACCATCGAAATTCCAGTAAAGGCCGTGGCAGGGACGACTGACATCA GCTGCGATGCAACCTTGCAGTCCCTCGGTACCGCAGGCACGGAAGTCAGCCTGGTGGATTTCCGCTTCTTCGTTCACGAT CTGGCGGTGGTTACCGATGAAGGCCAGGTTATTCCCGTAGCACTGGACGCAGACGCCGAATCGCAAAACGCCGACGTAGC CCTGCTCGATTTCCGCGACAAAGATGAGAACTGTGCCGGCGAAGGAGCCAACACGAATTTCAACGACACCATTACCATCA AAGTGGATGTGGACAGTGAGCTCGTTATTAGCGACCTGCAGTTCACTCTGGGCGTGCCGTTCGAACTCAATCATTTGGAT CAGTCACTGGCGGAAGAACCGCTGCGCAACCCAGGGAAAGCTAGCGGCATGGCCTGGAGCTGGCGGGGAGGTTACAAATT TACCGGCCTGGATGTGAAACCGGTAAGCGACGACATCTCTAAAAACTGGCATATCCATATCGGTAGCACCGGCTGTACCG CTGACCCCGCTGAAGGTGAAGAACCCGTACCCTGCCCCAATCCAAACCGCGCAACGATTAAGCTGCCCTTAGAAGGAGCA AATTTAGAAGACATCGCCATTCAACTGGACTACGCCAAACTGGTGGAAGGAAGCAATCTATCCCAAGATGAAGGCGGTGC CAGTGGTTGTATGTCAGGATTCAGCGACCCGGAATGTCCCGCAATTTTCAAGCGCCTGGGCCTGCCATGGGGTGACACCG AAGCAGTCGAGCAAAGTGTCTTTTCTATCGTACCGAAATGA
Upstream 100 bases:
>100_bases GGCGATATGCCACATTCCAGCCAGCCGGCGATCTAAAGATAATCCCCCACCTACAGCGCAGACCTTGTCGCGTGCTTTGT TCAAAAAATCGGGGATTATC
Downstream 100 bases:
>100_bases TGAAGAAGCCATTTCTCCTGTTGGCCGGGCAATCGCCCGGCCTTTTCCTTGTGCTCGGCACGCTGCTCCTAAGCGGCTGC CCAGAGCAGAGCGAAACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MRILTLATASLATILTGCGGSSSSGDRAWESSRSSTARTIEIPVKAVAGTTDISCDATLQSLGTAGTEVSLVDFRFFVHD LAVVTDEGQVIPVALDADAESQNADVALLDFRDKDENCAGEGANTNFNDTITIKVDVDSELVISDLQFTLGVPFELNHLD QSLAEEPLRNPGKASGMAWSWRGGYKFTGLDVKPVSDDISKNWHIHIGSTGCTADPAEGEEPVPCPNPNRATIKLPLEGA NLEDIAIQLDYAKLVEGSNLSQDEGGASGCMSGFSDPECPAIFKRLGLPWGDTEAVEQSVFSIVPK
Sequences:
>Translated_306_residues MRILTLATASLATILTGCGGSSSSGDRAWESSRSSTARTIEIPVKAVAGTTDISCDATLQSLGTAGTEVSLVDFRFFVHD LAVVTDEGQVIPVALDADAESQNADVALLDFRDKDENCAGEGANTNFNDTITIKVDVDSELVISDLQFTLGVPFELNHLD QSLAEEPLRNPGKASGMAWSWRGGYKFTGLDVKPVSDDISKNWHIHIGSTGCTADPAEGEEPVPCPNPNRATIKLPLEGA NLEDIAIQLDYAKLVEGSNLSQDEGGASGCMSGFSDPECPAIFKRLGLPWGDTEAVEQSVFSIVPK >Mature_306_residues MRILTLATASLATILTGCGGSSSSGDRAWESSRSSTARTIEIPVKAVAGTTDISCDATLQSLGTAGTEVSLVDFRFFVHD LAVVTDEGQVIPVALDADAESQNADVALLDFRDKDENCAGEGANTNFNDTITIKVDVDSELVISDLQFTLGVPFELNHLD QSLAEEPLRNPGKASGMAWSWRGGYKFTGLDVKPVSDDISKNWHIHIGSTGCTADPAEGEEPVPCPNPNRATIKLPLEGA NLEDIAIQLDYAKLVEGSNLSQDEGGASGCMSGFSDPECPAIFKRLGLPWGDTEAVEQSVFSIVPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32406; Mature: 32406
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILTLATASLATILTGCGGSSSSGDRAWESSRSSTARTIEIPVKAVAGTTDISCDATLQ CEEEEEHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHH SLGTAGTEVSLVDFRFFVHDLAVVTDEGQVIPVALDADAESQNADVALLDFRDKDENCAG HHCCCCCEEEEEHHHHHHHHEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCC EGANTNFNDTITIKVDVDSELVISDLQFTLGVPFELNHLDQSLAEEPLRNPGKASGMAWS CCCCCCCCCEEEEEEECCCCEEEEECCEEECCCEEEHHHHHHHHHHHHCCCCCCCCEEEE WRGGYKFTGLDVKPVSDDISKNWHIHIGSTGCTADPAEGEEPVPCPNPNRATIKLPLEGA ECCCEEEECEEEEECCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC NLEDIAIQLDYAKLVEGSNLSQDEGGASGCMSGFSDPECPAIFKRLGLPWGDTEAVEQSV CCEEEEEEEEHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHH FSIVPK HHHCCC >Mature Secondary Structure MRILTLATASLATILTGCGGSSSSGDRAWESSRSSTARTIEIPVKAVAGTTDISCDATLQ CEEEEEHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHH SLGTAGTEVSLVDFRFFVHDLAVVTDEGQVIPVALDADAESQNADVALLDFRDKDENCAG HHCCCCCEEEEEHHHHHHHHEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCC EGANTNFNDTITIKVDVDSELVISDLQFTLGVPFELNHLDQSLAEEPLRNPGKASGMAWS CCCCCCCCCEEEEEEECCCCEEEEECCEEECCCEEEHHHHHHHHHHHHCCCCCCCCEEEE WRGGYKFTGLDVKPVSDDISKNWHIHIGSTGCTADPAEGEEPVPCPNPNRATIKLPLEGA ECCCEEEECEEEEECCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC NLEDIAIQLDYAKLVEGSNLSQDEGGASGCMSGFSDPECPAIFKRLGLPWGDTEAVEQSV CCEEEEEEEEHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHH FSIVPK HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA