| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835000
Identifier: 110835000
GI number: 110835000
Start: 2444363
End: 2445670
Strand: Direct
Name: 110835000
Synonym: ABO_2139
Alternate gene names: NA
Gene position: 2444363-2445670 (Clockwise)
Preceding gene: 110834999
Following gene: 110835001
Centisome position: 78.34
GC content: 55.58
Gene sequence:
>1308_bases ATGCAACGCATGATGAAAAACCTGAAACAGAACGCTGCACTGCCGCTGTCCCTGCTTGCCGCTCTTACCATGGTCGGCTG TAATGAAACGGGCTCCAGCTCACTGGGTAGCAGTGAAGATGAACACGAGCATGCAGAGAGTGATCACCCCGGCCGCTTAG TGATTGCCGCTGGTGATGACGGCTCTCAGCTCTACATGTATGACCTTGAGGCCAATGCCTTGCTGCCCGGCACCTTGACC CTGGATTATGATGCCAGCGCACTCTACACCAGCCCGGGCAAGCGTTTTGTTCTGGCGATACAGCGTGATAACGACCAGGT ACAGGTCATCGATGGCGGCCTCTATTTGCATGACGACCACGTGGATGAAGTGATTCCCTCCTTCGCAGGAACGCTGACTG GCCCGGCACCAACCCACTTTCGGGTTCATGGTGAACAGGCCGCTCTGTTCTATGATGGCGATGCAGACAACGCTGTCATG GCCCAGATGGAGCTCCTCACCGATGAATCTTTGGAAACGGCCTCCAGCGAAGCCAGCCAAACGCTAACCAGCGCTCACCA TGGCGTTGCAGAACCCCGTGGCGATGTGTTGCTCACCACCTTCCGCACCGCCGACGACGGCCTCCCGGAAACCGTTGACG TCTACCATCAGCACAACGATCACTATCACAAGGAAGACACCATCTCACTAACCTGCCCAGAGCTACATGGCGCAGGCTCA AACGAAGATTATTCTGTGTTTGGCTGCGACGACGGCATCCTGATCGTCCACCAGAACGGTGAGGAATTCACCGCAGAGCA TGTGGATAACGCTACCCTAGGCCTTGCGGCTGGAGAGCGCATTAGCGGCTTCGACAGCCATCACGAACTGAGCCATTTCA TAGGCTATGCCGGTGATCGAGTCTTCGTCATACATCCGGAAGATGGCGATGCTGAAGAACTGGATTGGACCGAAGGCGCC ACCGTATCGCTAGAAAACCATAGCCTTGATCCCCACGCTGAGCACCTAGTGCTGCTGGATGATGCCGGTGACCTGCGCAT CTTTGACACAACCGATTGGAGTGAACATGCGCACGTAGAAGATGCCATCGCGCCGGGCAATACTCATATGGTTGTGGCCG GTGAGCCCGCACATGTTTATCTTTCCGATAGCGGCAACCAATTTATCCTCGTGGTGCACCTGGAGGAAGGCAGCGTTGAA GAATCACTACCTTTGACCTTCCCGCCTGCGGCTCTTGCTTGGGCTGGCCTTGATACCGACCATGACGAAGAAGACCATGA GGACGAAGACGATGGTCATGACCATTAA
Upstream 100 bases:
>100_bases CCGTAGGCACCCGCATTGAATTTTGAGCCGCAACGTTAAACGGCATCCGTACCGGCGCCTTTACTCCGCCGGACGCAACA ATATGAATATGGAGAACCCC
Downstream 100 bases:
>100_bases TCGTCGAAACGGCTAACCGCAGGCTACTTGCAGGGGATTTTCTTCACCTTTTGCAAGCAGCCCGCCGTTTCCTCCCAAGA CAGCGCTGGTCGCCGTCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter; WD-40 Repeat-Containing Protein; 5-Methyltetrahydrofolate-Homocysteine Methyltransferase
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MQRMMKNLKQNAALPLSLLAALTMVGCNETGSSSLGSSEDEHEHAESDHPGRLVIAAGDDGSQLYMYDLEANALLPGTLT LDYDASALYTSPGKRFVLAIQRDNDQVQVIDGGLYLHDDHVDEVIPSFAGTLTGPAPTHFRVHGEQAALFYDGDADNAVM AQMELLTDESLETASSEASQTLTSAHHGVAEPRGDVLLTTFRTADDGLPETVDVYHQHNDHYHKEDTISLTCPELHGAGS NEDYSVFGCDDGILIVHQNGEEFTAEHVDNATLGLAAGERISGFDSHHELSHFIGYAGDRVFVIHPEDGDAEELDWTEGA TVSLENHSLDPHAEHLVLLDDAGDLRIFDTTDWSEHAHVEDAIAPGNTHMVVAGEPAHVYLSDSGNQFILVVHLEEGSVE ESLPLTFPPAALAWAGLDTDHDEEDHEDEDDGHDH
Sequences:
>Translated_435_residues MQRMMKNLKQNAALPLSLLAALTMVGCNETGSSSLGSSEDEHEHAESDHPGRLVIAAGDDGSQLYMYDLEANALLPGTLT LDYDASALYTSPGKRFVLAIQRDNDQVQVIDGGLYLHDDHVDEVIPSFAGTLTGPAPTHFRVHGEQAALFYDGDADNAVM AQMELLTDESLETASSEASQTLTSAHHGVAEPRGDVLLTTFRTADDGLPETVDVYHQHNDHYHKEDTISLTCPELHGAGS NEDYSVFGCDDGILIVHQNGEEFTAEHVDNATLGLAAGERISGFDSHHELSHFIGYAGDRVFVIHPEDGDAEELDWTEGA TVSLENHSLDPHAEHLVLLDDAGDLRIFDTTDWSEHAHVEDAIAPGNTHMVVAGEPAHVYLSDSGNQFILVVHLEEGSVE ESLPLTFPPAALAWAGLDTDHDEEDHEDEDDGHDH >Mature_435_residues MQRMMKNLKQNAALPLSLLAALTMVGCNETGSSSLGSSEDEHEHAESDHPGRLVIAAGDDGSQLYMYDLEANALLPGTLT LDYDASALYTSPGKRFVLAIQRDNDQVQVIDGGLYLHDDHVDEVIPSFAGTLTGPAPTHFRVHGEQAALFYDGDADNAVM AQMELLTDESLETASSEASQTLTSAHHGVAEPRGDVLLTTFRTADDGLPETVDVYHQHNDHYHKEDTISLTCPELHGAGS NEDYSVFGCDDGILIVHQNGEEFTAEHVDNATLGLAAGERISGFDSHHELSHFIGYAGDRVFVIHPEDGDAEELDWTEGA TVSLENHSLDPHAEHLVLLDDAGDLRIFDTTDWSEHAHVEDAIAPGNTHMVVAGEPAHVYLSDSGNQFILVVHLEEGSVE ESLPLTFPPAALAWAGLDTDHDEEDHEDEDDGHDH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47170; Mature: 47170
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRMMKNLKQNAALPLSLLAALTMVGCNETGSSSLGSSEDEHEHAESDHPGRLVIAAGDD CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCC GSQLYMYDLEANALLPGTLTLDYDASALYTSPGKRFVLAIQRDNDQVQVIDGGLYLHDDH CCEEEEEEECCCEECCCEEEEECCCCEEEECCCCEEEEEEEECCCEEEEEECCEEEECCC VDEVIPSFAGTLTGPAPTHFRVHGEQAALFYDGDADNAVMAQMELLTDESLETASSEASQ HHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHH TLTSAHHGVAEPRGDVLLTTFRTADDGLPETVDVYHQHNDHYHKEDTISLTCPELHGAGS HHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHEECCCCCCCCCCEEEEECCHHCCCCC NEDYSVFGCDDGILIVHQNGEEFTAEHVDNATLGLAAGERISGFDSHHELSHFIGYAGDR CCCEEEEECCCCEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCE VFVIHPEDGDAEELDWTEGATVSLENHSLDPHAEHLVLLDDAGDLRIFDTTDWSEHAHVE EEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHH DAIAPGNTHMVVAGEPAHVYLSDSGNQFILVVHLEEGSVEESLPLTFPPAALAWAGLDTD HHCCCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHEEECCCCC HDEEDHEDEDDGHDH CCCCCCCCCCCCCCC >Mature Secondary Structure MQRMMKNLKQNAALPLSLLAALTMVGCNETGSSSLGSSEDEHEHAESDHPGRLVIAAGDD CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCC GSQLYMYDLEANALLPGTLTLDYDASALYTSPGKRFVLAIQRDNDQVQVIDGGLYLHDDH CCEEEEEEECCCEECCCEEEEECCCCEEEECCCCEEEEEEEECCCEEEEEECCEEEECCC VDEVIPSFAGTLTGPAPTHFRVHGEQAALFYDGDADNAVMAQMELLTDESLETASSEASQ HHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHH TLTSAHHGVAEPRGDVLLTTFRTADDGLPETVDVYHQHNDHYHKEDTISLTCPELHGAGS HHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHEECCCCCCCCCCEEEEECCHHCCCCC NEDYSVFGCDDGILIVHQNGEEFTAEHVDNATLGLAAGERISGFDSHHELSHFIGYAGDR CCCEEEEECCCCEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCE VFVIHPEDGDAEELDWTEGATVSLENHSLDPHAEHLVLLDDAGDLRIFDTTDWSEHAHVE EEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHH DAIAPGNTHMVVAGEPAHVYLSDSGNQFILVVHLEEGSVEESLPLTFPPAALAWAGLDTD HHCCCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHEEECCCCC HDEEDHEDEDDGHDH CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA