Click here to switch to the map view.

The map label for this gene is cirA [C]

Identifier: 110834999

GI number: 110834999

Start: 2442219

End: 2444288

Strand: Direct

Name: cirA [C]

Synonym: ABO_2138

Alternate gene names: 110834999

Gene position: 2442219-2444288 (Clockwise)

Preceding gene: 110834998

Following gene: 110835000

Centisome position: 78.27

GC content: 56.96

Gene sequence:

>2070_bases
ATGACTTTTCGACGCCAGACCCTCTCCGGGTGCGTCGCCGTGGCCCTATTGGCACCCACGGCAGTATTGGCTGAAGCTGA
AAACAACAGTGCAGGCCTAGAAAAAGCTCACGAGCTAAAACAAGTGGACGTGTCCGCCCTGCCGCTCGGAAGCAGCAGCT
CCAGCACACCCTATTCGGTGATGGATCAACAAACCCTCACTCAGAAGAACAAGGACACCCTCGGTGAAACCCTGAAAAAC
CAGCCCGGAGTCCACAGCGACACCTTCGGTGGTGGCGCCAGTCGACCGGTGATCCGTGGCCAAGGGGGCCCACGCATAGG
TATTCTCAGTGACGGCTCCCAGGTGCTGGATGCTTCCAGCATTTCACCAGACCATGCCATCACTGTAGACCCAATGCTGG
CTCGTCAGATCGAGGTTCTACGCGGCCCATCTACCCTGCTTTATGGCAGCGGCGCCAGCGGTGGCATTGTAAATGTGCTA
GACAACCGCATTCCCACTCAACGGCCTCTAGAAGAGGTGGAAGGTTTCGTGGCAATCCGAGCCAACAGCGTGGCCGATGA
GAACGCCACCGCTGCAGGCATCACCGTTTCCGCTACCGACCATTTGGTATTTCGGGTGGAAGGTAGCCGTCGCGATGCGG
AGGACTACGAAGTAAACGGCTTCGAAGAGCTCACCGTCCCAGGCACCTATGCGGAAAGCGACAATGCCAGCATTGGAGCC
TCCTGGATTGGCGATCAAGGTTTCTTCGGCATGGCTTACAGCTATCGCCGAGATAACTACGGGCTGCCCGGTCATAGCCA
CGAATTTGAAGAGTGCGAGGCCAACGGCACCAGCTTGAGCTGTCCTTCTGGAGGCCATGATCACGACCATGAGGGCGAAA
TTGTCCCCTACGTGGATCTGGCCAGCCGTCGAGTGGATGCTCGAGGTGAATACCGCGACCCATTCTCTGGCATTGCCGCC
ATTCGTTTTCGAGGTAACCACACCGATTACCGCCACCACGAAATCGAAGAAGGGGCCATCGGCAGTACTTTCACCAACAA
GGGTGGAGACGCCCGGCTGGAAGTGGAGCACAAACCGTTCGGTAACTGGCGCGGCGTGGTAGGACTTCAGTACACCAACT
TCGATTTCAGCTCCCTGGGGCATGAAGCCTTCGTGCCGAAAACCGAAACTGAATCTATCGCCATATTCGCGGTAGAGGAA
TATGTCCTCAATGAACAATGGTCCTTCGAATTGGGGGCGCGCCAGGAGCACCTGACGCAAACACCGGACCAACGCAATGG
CCAGGCTCTTGCCAAAGTCACAGCGGACAATGCGTCTTTCTCCGGCGCAGCCAACTGGGCCTTTGTTCCCGGTTACGAGC
TAGTACTGTCCGTAGGCCACTCTGGCCGAGCACCCAGCGCCCAAGAGTTGTATGCACAGGGGGTCCATCTGGCCACCAAC
ACCTATGAATGCGGCCTGCTCAGCGATTGCGGTGGAGGACAACGTGACTTGGACGATGAAGTCAGCCTCAACGCCAACCT
GAACCTACGTAAAACCCGTGGGGATTGGTTGTTTGATCTGGGCGTGTTCGAAAACCGTATCAACAACTACATCTATGCCC
GCACTCTGGATCAGCAGGAAGACTTCCGCCTGATCAAATACAGCCAACGTGACGCCACCTTCACGGGTGCCGAAGCATCC
GTGAGTTACTACGGTATCGACCCGGTTGGCATCACCGTATTTGGGGATATGGTCCGCGCTACTTTCGATGACGGCGGCTA
CCTGCCTCGCATTCCGGCCAAGCGACTGGGCACACGCCTCAATAGCTACCTGGGTAACTTCGACGGTGAACTGGAAGTGT
ATCGCAGCTTCGTTCAGGACCAACTTTCCGGGTTCGAAGAGCGCACCGCCGCCTACGACATGGTCAACGCCACTCTCAGC
TACCGACTACGAGGCAACCAGCGCTATACCTTCTATGTGCGCGGTAACAACCTGCTGGGTGAAGAAGTGTTCAACCACTC
GTCTTTCCTAGCCAGCACCGTGCCGGAGCCGGGCCGCAATATCACCGTAGGCACCCGCATTGAATTTTGA

Upstream 100 bases:

>100_bases
CAGGAAAGAACGTGTTTCCGGCATGAGTCCGGCCAGCCCCTTTAATCCAGCTGCGCCCTTTTACTCATGCCCTGCATGAA
TGCTAGAGACAGAGGTAGTT

Downstream 100 bases:

>100_bases
GCCGCAACGTTAAACGGCATCCGTACCGGCGCCTTTACTCCGCCGGACGCAACAATATGAATATGGAGAACCCCATGCAA
CGCATGATGAAAAACCTGAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 689; Mature: 688

Protein sequence:

>689_residues
MTFRRQTLSGCVAVALLAPTAVLAEAENNSAGLEKAHELKQVDVSALPLGSSSSSTPYSVMDQQTLTQKNKDTLGETLKN
QPGVHSDTFGGGASRPVIRGQGGPRIGILSDGSQVLDASSISPDHAITVDPMLARQIEVLRGPSTLLYGSGASGGIVNVL
DNRIPTQRPLEEVEGFVAIRANSVADENATAAGITVSATDHLVFRVEGSRRDAEDYEVNGFEELTVPGTYAESDNASIGA
SWIGDQGFFGMAYSYRRDNYGLPGHSHEFEECEANGTSLSCPSGGHDHDHEGEIVPYVDLASRRVDARGEYRDPFSGIAA
IRFRGNHTDYRHHEIEEGAIGSTFTNKGGDARLEVEHKPFGNWRGVVGLQYTNFDFSSLGHEAFVPKTETESIAIFAVEE
YVLNEQWSFELGARQEHLTQTPDQRNGQALAKVTADNASFSGAANWAFVPGYELVLSVGHSGRAPSAQELYAQGVHLATN
TYECGLLSDCGGGQRDLDDEVSLNANLNLRKTRGDWLFDLGVFENRINNYIYARTLDQQEDFRLIKYSQRDATFTGAEAS
VSYYGIDPVGITVFGDMVRATFDDGGYLPRIPAKRLGTRLNSYLGNFDGELEVYRSFVQDQLSGFEERTAAYDMVNATLS
YRLRGNQRYTFYVRGNNLLGEEVFNHSSFLASTVPEPGRNITVGTRIEF

Sequences:

>Translated_689_residues
MTFRRQTLSGCVAVALLAPTAVLAEAENNSAGLEKAHELKQVDVSALPLGSSSSSTPYSVMDQQTLTQKNKDTLGETLKN
QPGVHSDTFGGGASRPVIRGQGGPRIGILSDGSQVLDASSISPDHAITVDPMLARQIEVLRGPSTLLYGSGASGGIVNVL
DNRIPTQRPLEEVEGFVAIRANSVADENATAAGITVSATDHLVFRVEGSRRDAEDYEVNGFEELTVPGTYAESDNASIGA
SWIGDQGFFGMAYSYRRDNYGLPGHSHEFEECEANGTSLSCPSGGHDHDHEGEIVPYVDLASRRVDARGEYRDPFSGIAA
IRFRGNHTDYRHHEIEEGAIGSTFTNKGGDARLEVEHKPFGNWRGVVGLQYTNFDFSSLGHEAFVPKTETESIAIFAVEE
YVLNEQWSFELGARQEHLTQTPDQRNGQALAKVTADNASFSGAANWAFVPGYELVLSVGHSGRAPSAQELYAQGVHLATN
TYECGLLSDCGGGQRDLDDEVSLNANLNLRKTRGDWLFDLGVFENRINNYIYARTLDQQEDFRLIKYSQRDATFTGAEAS
VSYYGIDPVGITVFGDMVRATFDDGGYLPRIPAKRLGTRLNSYLGNFDGELEVYRSFVQDQLSGFEERTAAYDMVNATLS
YRLRGNQRYTFYVRGNNLLGEEVFNHSSFLASTVPEPGRNITVGTRIEF
>Mature_688_residues
TFRRQTLSGCVAVALLAPTAVLAEAENNSAGLEKAHELKQVDVSALPLGSSSSSTPYSVMDQQTLTQKNKDTLGETLKNQ
PGVHSDTFGGGASRPVIRGQGGPRIGILSDGSQVLDASSISPDHAITVDPMLARQIEVLRGPSTLLYGSGASGGIVNVLD
NRIPTQRPLEEVEGFVAIRANSVADENATAAGITVSATDHLVFRVEGSRRDAEDYEVNGFEELTVPGTYAESDNASIGAS
WIGDQGFFGMAYSYRRDNYGLPGHSHEFEECEANGTSLSCPSGGHDHDHEGEIVPYVDLASRRVDARGEYRDPFSGIAAI
RFRGNHTDYRHHEIEEGAIGSTFTNKGGDARLEVEHKPFGNWRGVVGLQYTNFDFSSLGHEAFVPKTETESIAIFAVEEY
VLNEQWSFELGARQEHLTQTPDQRNGQALAKVTADNASFSGAANWAFVPGYELVLSVGHSGRAPSAQELYAQGVHLATNT
YECGLLSDCGGGQRDLDDEVSLNANLNLRKTRGDWLFDLGVFENRINNYIYARTLDQQEDFRLIKYSQRDATFTGAEASV
SYYGIDPVGITVFGDMVRATFDDGGYLPRIPAKRLGTRLNSYLGNFDGELEVYRSFVQDQLSGFEERTAAYDMVNATLSY
RLRGNQRYTFYVRGNNLLGEEVFNHSSFLASTVPEPGRNITVGTRIEF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 75229; Mature: 75097

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRRQTLSGCVAVALLAPTAVLAEAENNSAGLEKAHELKQVDVSALPLGSSSSSTPYSV
CCCCHHHHHHHHHHHHHHCHHEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCHHH
MDQQTLTQKNKDTLGETLKNQPGVHSDTFGGGASRPVIRGQGGPRIGILSDGSQVLDASS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHEECCC
ISPDHAITVDPMLARQIEVLRGPSTLLYGSGASGGIVNVLDNRIPTQRPLEEVEGFVAIR
CCCCCEEEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHCCEEEEE
ANSVADENATAAGITVSATDHLVFRVEGSRRDAEDYEVNGFEELTVPGTYAESDNASIGA
ECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCE
SWIGDQGFFGMAYSYRRDNYGLPGHSHEFEECEANGTSLSCPSGGHDHDHEGEIVPYVDL
EECCCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEHH
ASRRVDARGEYRDPFSGIAAIRFRGNHTDYRHHEIEEGAIGSTFTNKGGDARLEVEHKPF
HHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GNWRGVVGLQYTNFDFSSLGHEAFVPKTETESIAIFAVEEYVLNEQWSFELGARQEHLTQ
CCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCEECCCCHHHHCC
TPDQRNGQALAKVTADNASFSGAANWAFVPGYELVLSVGHSGRAPSAQELYAQGVHLATN
CCCCCCCCEEEEEEECCCCCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHHCCEEEECC
TYECGLLSDCGGGQRDLDDEVSLNANLNLRKTRGDWLFDLGVFENRINNYIYARTLDQQE
CEECCCCCCCCCCCCCCCCCEEECCCEEEEECCCCEEEEHHHHHHHHCCEEEEEECCCCC
DFRLIKYSQRDATFTGAEASVSYYGIDPVGITVFGDMVRATFDDGGYLPRIPAKRLGTRL
CCEEEEECCCCCEEECCCCEEEEECCCCCEEEEEECHHHEEECCCCCCCCCCHHHHHHHH
NSYLGNFDGELEVYRSFVQDQLSGFEERTAAYDMVNATLSYRLRGNQRYTFYVRGNNLLG
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEEEECCEEEEEEEECCCCCH
EEVFNHSSFLASTVPEPGRNITVGTRIEF
HHHHCCHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
TFRRQTLSGCVAVALLAPTAVLAEAENNSAGLEKAHELKQVDVSALPLGSSSSSTPYSV
CCCHHHHHHHHHHHHHHCHHEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCHHH
MDQQTLTQKNKDTLGETLKNQPGVHSDTFGGGASRPVIRGQGGPRIGILSDGSQVLDASS
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHEECCC
ISPDHAITVDPMLARQIEVLRGPSTLLYGSGASGGIVNVLDNRIPTQRPLEEVEGFVAIR
CCCCCEEEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHCCEEEEE
ANSVADENATAAGITVSATDHLVFRVEGSRRDAEDYEVNGFEELTVPGTYAESDNASIGA
ECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCE
SWIGDQGFFGMAYSYRRDNYGLPGHSHEFEECEANGTSLSCPSGGHDHDHEGEIVPYVDL
EECCCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCEEEEEHH
ASRRVDARGEYRDPFSGIAAIRFRGNHTDYRHHEIEEGAIGSTFTNKGGDARLEVEHKPF
HHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
GNWRGVVGLQYTNFDFSSLGHEAFVPKTETESIAIFAVEEYVLNEQWSFELGARQEHLTQ
CCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCEECCCCHHHHCC
TPDQRNGQALAKVTADNASFSGAANWAFVPGYELVLSVGHSGRAPSAQELYAQGVHLATN
CCCCCCCCEEEEEEECCCCCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHHCCEEEECC
TYECGLLSDCGGGQRDLDDEVSLNANLNLRKTRGDWLFDLGVFENRINNYIYARTLDQQE
CEECCCCCCCCCCCCCCCCCEEECCCEEEEECCCCEEEEHHHHHHHHCCEEEEEECCCCC
DFRLIKYSQRDATFTGAEASVSYYGIDPVGITVFGDMVRATFDDGGYLPRIPAKRLGTRL
CCEEEEECCCCCEEECCCCEEEEECCCCCEEEEEECHHHEEECCCCCCCCCCHHHHHHHH
NSYLGNFDGELEVYRSFVQDQLSGFEERTAAYDMVNATLSYRLRGNQRYTFYVRGNNLLG
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEEEECCEEEEEEEECCCCCH
EEVFNHSSFLASTVPEPGRNITVGTRIEF
HHHHCCHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]