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The map label for this gene is ybiH [H]

Identifier: 110636397

GI number: 110636397

Start: 4381995

End: 4382732

Strand: Reverse

Name: ybiH [H]

Synonym: Meso_4073

Alternate gene names: 110636397

Gene position: 4382732-4381995 (Counterclockwise)

Preceding gene: 110636400

Following gene: 110636396

Centisome position: 99.33

GC content: 61.11

Gene sequence:

>738_bases
ATGGAAATCATTCTTGGTACTGGTGACGGAAAACCCCTGCGTCTCAGCGGGGCTGATCGAACACGCGAAGCGCTGATCCG
CGCCGCGCTCCGGCTCTTCGGTGAACAGGGATTCGACGCCACCTCGACGCGTGCGATCGCCGCCGAGGCGGGAGCGAATA
TCGGCTCCATCGCCTATCATTTCGGGGGAAAGGAAGGGCTTCGAGCGGCCTGTGCCCGCTATATCGTCGAAAGAATCGCG
GCCGTCACCGATCGCACCCTTGATGATTTTGCCGAGGGCGACGAAAAGGTCTCCGCCACTCCGGAGGAAGCCCGCGCCCT
GCTCTGCCAGGTAATCGACACGCTTATGGGCTTTATCGTAGCTTCACCTGAAGCCGGTGAGTTCGTGCAGTTCCTGCTGC
GGGAGATGACACATCCGACCGCAGCACTCGACATCATCTATGACGGGGTGTTCGAGCCGACGCATCTGCGGCTCTGCAGA
CTGTGGGAGGCAGCCACCGGCGAACCCGCCGAGAGCGAGCAGACCAGAATCGCGGTCTTCACCATCATCGGTCAGGTGAC
CTATTTCAGAATCGCGCAGGAAGCAGTTCTGCGGCGCATAGGCTGGGAGCGGATCGGCCGCCGCGAAACCGCCGCGATCT
CCGAGATTGTGAAGGGCAATCTGAAGGCCATCCTGGATCAACGCAGGTTGAAAGTGCGGCAGAGCAGCCTTGCGACGCAG
GCACTTCCCGATCCTTGA

Upstream 100 bases:

>100_bases
TCCTTGGCCATGCTGCCTCTCCTCAAGACTAGTCAAAACCCGTGGGAGAACTTGCGCAAGAGCATTGACCAAAATCAATC
GACTGATTAAATGGCCGGCT

Downstream 100 bases:

>100_bases
CGATTTAAAAGGGGAGACCTAGTTTAGAATTATTCTAATCAGGTGGGGTTCCCCGTTATGTTCAATCGCCTCTTCGGGTT
CAACCGCCGGTCTTTCTCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MEIILGTGDGKPLRLSGADRTREALIRAALRLFGEQGFDATSTRAIAAEAGANIGSIAYHFGGKEGLRAACARYIVERIA
AVTDRTLDDFAEGDEKVSATPEEARALLCQVIDTLMGFIVASPEAGEFVQFLLREMTHPTAALDIIYDGVFEPTHLRLCR
LWEAATGEPAESEQTRIAVFTIIGQVTYFRIAQEAVLRRIGWERIGRRETAAISEIVKGNLKAILDQRRLKVRQSSLATQ
ALPDP

Sequences:

>Translated_245_residues
MEIILGTGDGKPLRLSGADRTREALIRAALRLFGEQGFDATSTRAIAAEAGANIGSIAYHFGGKEGLRAACARYIVERIA
AVTDRTLDDFAEGDEKVSATPEEARALLCQVIDTLMGFIVASPEAGEFVQFLLREMTHPTAALDIIYDGVFEPTHLRLCR
LWEAATGEPAESEQTRIAVFTIIGQVTYFRIAQEAVLRRIGWERIGRRETAAISEIVKGNLKAILDQRRLKVRQSSLATQ
ALPDP
>Mature_245_residues
MEIILGTGDGKPLRLSGADRTREALIRAALRLFGEQGFDATSTRAIAAEAGANIGSIAYHFGGKEGLRAACARYIVERIA
AVTDRTLDDFAEGDEKVSATPEEARALLCQVIDTLMGFIVASPEAGEFVQFLLREMTHPTAALDIIYDGVFEPTHLRLCR
LWEAATGEPAESEQTRIAVFTIIGQVTYFRIAQEAVLRRIGWERIGRRETAAISEIVKGNLKAILDQRRLKVRQSSLATQ
ALPDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=219, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26827; Mature: 26827

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIILGTGDGKPLRLSGADRTREALIRAALRLFGEQGFDATSTRAIAAEAGANIGSIAYH
CEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH
FGGKEGLRAACARYIVERIAAVTDRTLDDFAEGDEKVSATPEEARALLCQVIDTLMGFIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ASPEAGEFVQFLLREMTHPTAALDIIYDGVFEPTHLRLCRLWEAATGEPAESEQTRIAVF
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
TIIGQVTYFRIAQEAVLRRIGWERIGRRETAAISEIVKGNLKAILDQRRLKVRQSSLATQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPDP
CCCCC
>Mature Secondary Structure
MEIILGTGDGKPLRLSGADRTREALIRAALRLFGEQGFDATSTRAIAAEAGANIGSIAYH
CEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH
FGGKEGLRAACARYIVERIAAVTDRTLDDFAEGDEKVSATPEEARALLCQVIDTLMGFIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ASPEAGEFVQFLLREMTHPTAALDIIYDGVFEPTHLRLCRLWEAATGEPAESEQTRIAVF
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
TIIGQVTYFRIAQEAVLRRIGWERIGRRETAAISEIVKGNLKAILDQRRLKVRQSSLATQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPDP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]