BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is rbsA [C]

Identifier: 110632626

GI number: 110632626

Start: 305408

End: 306910

Strand: Reverse

Name: rbsA [C]

Synonym: Meso_0265

Alternate gene names: 110632626

Gene position: 306910-305408 (Counterclockwise)

Preceding gene: 110632627

Following gene: 110632625

Centisome position: 6.96

GC content: 63.81

Gene sequence:

>1503_bases
ATGTCCAATCTGACCATCCGGGGAGCGCGAAAGGCTTACGGCGCGACGGTAGCCCTCAGGCGCGGCGACTTGGACCTCAG
GGAAGGCGAGGTTCATGTGCTCATCGGCTCGAACGGATCGGGCAAGAGCACGCTGTGCAAGATCGTCTCGGGCAGCGTGC
GGCCCGATGCGGGAGAGGTGCTGATCGACGGCAAAACCGTTTCGATCGACGGGCCGCGCGCCGCGCGCGCTCTGGGATTG
GCGACCTTCTATCAGGAACTGAGCCTTGCTGCCCACCGCACTGTGGCGGAAAATATCAGCCTGCCGGAATTGCCGGGGAA
GGGCGGCTTCTTCGTTGACCGCGAGAGGCTGAACGGGATCGCCGAGCGATATATCCGGCGCTTCGCCGATGTGGCCGGCG
AGGGCTTTTCGGCGGATGCTCGGGTGGAGCACCTGCGCGAAGACCAGCGGCAGTTGGTCGAGATCATGAAGACGCTGGCG
ACCGAGGCTCCGATACTCATCTTCGACGAGCCGACCTCCTCCCTCGACCGCTCGCAGGTCGAAAGGTTTTTCGAGGTGCT
GCGCGAGCTGAAGGCGCAAGGCCGCGCAATCATCTTCATCTCCCACCGCATGGACGAGATTTTCGCGATTGGCGACCGCG
TAACCGTGATCCGCGACGGCGAGACCGTGGGCACGTCGCTGATCTCAGAGACGAAACCCGCAAGCATCATCCACCAGATG
GTGGGGGAATCGGAACTGGCCGTTACCAACGGCGCGCCGCCCGCCGCCGCGGAGGTGAAGACCGAAGCCGTGCTCTCCGT
CGCCGGCCTGAGCGCCAAGGGTTTCGTCAATGTGAGTTTCGAGGTGCGGCGCGGCGAGATCTTGGGCTTCGGCGGCCTGC
ACGGTCAAGGACAATCAGCCGTGCTGCGCTCGATCTTCGGCGTCAATCCCACTGACCAGGGCACGATCCATATCAAAGGC
GAAAAGCGGACGATCCGCTCCCCGCGCGAAGCGATCCGCTGCGGGCTTGCTTATATTTCCGGCGACCGCGGGCGTGACGG
GGTGGTGCATGGGCGGCCGATCCTGGAAAATGTGACGCCTATCCACTTCCTGCGCAACAAGCTCTCGCTGGTGCGCCCGG
GCAGCCTGCGCGAACGCGCGGCGAAGCCGCTTTCGGCACTGAAAACGCGCTTTGCAGGCTATGACCAGCCGGTCAATGCG
CTTTCCGGCGGCAATCAGCAGAAGATCGTGATCGCGCGCTGGCTGATCGACCGGCCGGATGTGCTTTTGCTGGACGATCC
CACCAAGGGCATCGACCTGCAGGCAAAGACAGACCTCTTCGCCCTCATCCGCTCGCTGGCCGCCGAGGGCATGGGAATTG
TGCTCTATTCATCTGAAGACGCGGAGCTGCTCGCCAATGCTGACCGCATCCTCGTCTTCAACAGCGGCTCGGTGAGCCGG
GAGCTTACCGGCGCAGACCGCACCCGCTACAACCTCTATCACGCCGCATACGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
CTTTCCATCGAAGAGGCCGAAGCTCTCTTTCAGTAAGCTCCTCCGCAGCGGGAGCGTGCCTGCCTTTGGGCGGGCGCGCT
CTTGCGCCCAAGGTGTTGCC

Downstream 100 bases:

>100_bases
TGAGTGCGATCGAGACAGGAACTTCGCAGCGCCCGGGCTTAGCCGCGCTGGTGGAACGTTTCCCCTTCCTGCCGGCGCTC
GTCATCCTCTTGGCGCTCCT

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MSNLTIRGARKAYGATVALRRGDLDLREGEVHVLIGSNGSGKSTLCKIVSGSVRPDAGEVLIDGKTVSIDGPRAARALGL
ATFYQELSLAAHRTVAENISLPELPGKGGFFVDRERLNGIAERYIRRFADVAGEGFSADARVEHLREDQRQLVEIMKTLA
TEAPILIFDEPTSSLDRSQVERFFEVLRELKAQGRAIIFISHRMDEIFAIGDRVTVIRDGETVGTSLISETKPASIIHQM
VGESELAVTNGAPPAAAEVKTEAVLSVAGLSAKGFVNVSFEVRRGEILGFGGLHGQGQSAVLRSIFGVNPTDQGTIHIKG
EKRTIRSPREAIRCGLAYISGDRGRDGVVHGRPILENVTPIHFLRNKLSLVRPGSLRERAAKPLSALKTRFAGYDQPVNA
LSGGNQQKIVIARWLIDRPDVLLLDDPTKGIDLQAKTDLFALIRSLAAEGMGIVLYSSEDAELLANADRILVFNSGSVSR
ELTGADRTRYNLYHAAYEAA

Sequences:

>Translated_500_residues
MSNLTIRGARKAYGATVALRRGDLDLREGEVHVLIGSNGSGKSTLCKIVSGSVRPDAGEVLIDGKTVSIDGPRAARALGL
ATFYQELSLAAHRTVAENISLPELPGKGGFFVDRERLNGIAERYIRRFADVAGEGFSADARVEHLREDQRQLVEIMKTLA
TEAPILIFDEPTSSLDRSQVERFFEVLRELKAQGRAIIFISHRMDEIFAIGDRVTVIRDGETVGTSLISETKPASIIHQM
VGESELAVTNGAPPAAAEVKTEAVLSVAGLSAKGFVNVSFEVRRGEILGFGGLHGQGQSAVLRSIFGVNPTDQGTIHIKG
EKRTIRSPREAIRCGLAYISGDRGRDGVVHGRPILENVTPIHFLRNKLSLVRPGSLRERAAKPLSALKTRFAGYDQPVNA
LSGGNQQKIVIARWLIDRPDVLLLDDPTKGIDLQAKTDLFALIRSLAAEGMGIVLYSSEDAELLANADRILVFNSGSVSR
ELTGADRTRYNLYHAAYEAA
>Mature_499_residues
SNLTIRGARKAYGATVALRRGDLDLREGEVHVLIGSNGSGKSTLCKIVSGSVRPDAGEVLIDGKTVSIDGPRAARALGLA
TFYQELSLAAHRTVAENISLPELPGKGGFFVDRERLNGIAERYIRRFADVAGEGFSADARVEHLREDQRQLVEIMKTLAT
EAPILIFDEPTSSLDRSQVERFFEVLRELKAQGRAIIFISHRMDEIFAIGDRVTVIRDGETVGTSLISETKPASIIHQMV
GESELAVTNGAPPAAAEVKTEAVLSVAGLSAKGFVNVSFEVRRGEILGFGGLHGQGQSAVLRSIFGVNPTDQGTIHIKGE
KRTIRSPREAIRCGLAYISGDRGRDGVVHGRPILENVTPIHFLRNKLSLVRPGSLRERAAKPLSALKTRFAGYDQPVNAL
SGGNQQKIVIARWLIDRPDVLLLDDPTKGIDLQAKTDLFALIRSLAAEGMGIVLYSSEDAELLANADRILVFNSGSVSRE
LTGADRTRYNLYHAAYEAA

Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21536376, Length=234, Percent_Identity=27.3504273504274, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI6005701, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI27881501, Length=221, Percent_Identity=23.9819004524887, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI30795238, Length=221, Percent_Identity=23.9819004524887, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI9955968, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI42741659, Length=201, Percent_Identity=29.3532338308458, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI9955966, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI45243524, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1790190, Length=499, Percent_Identity=36.0721442885772, Blast_Score=304, Evalue=7e-84,
Organism=Escherichia coli, GI1788210, Length=493, Percent_Identity=36.3083164300203, Blast_Score=295, Evalue=5e-81,
Organism=Escherichia coli, GI1788472, Length=481, Percent_Identity=35.3430353430353, Blast_Score=295, Evalue=6e-81,
Organism=Escherichia coli, GI1788897, Length=481, Percent_Identity=37.006237006237, Blast_Score=289, Evalue=2e-79,
Organism=Escherichia coli, GI48995001, Length=476, Percent_Identity=34.2436974789916, Blast_Score=281, Evalue=5e-77,
Organism=Escherichia coli, GI1790525, Length=494, Percent_Identity=33.4008097165992, Blast_Score=278, Evalue=8e-76,
Organism=Escherichia coli, GI1789991, Length=508, Percent_Identity=34.4488188976378, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1787792, Length=488, Percent_Identity=33.8114754098361, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=30.4166666666667, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=30.0847457627119, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788506, Length=541, Percent_Identity=25.8780036968577, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1789032, Length=217, Percent_Identity=31.7972350230415, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=28.9592760180996, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=27.8969957081545, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788450, Length=249, Percent_Identity=30.5220883534137, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI48994943, Length=496, Percent_Identity=25.2016129032258, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=30.3482587064677, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786319, Length=254, Percent_Identity=27.5590551181102, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI48994997, Length=237, Percent_Identity=31.2236286919831, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=30.0469483568075, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=30.6666666666667, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=29.4871794871795, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082267, Length=241, Percent_Identity=27.3858921161826, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789672, Length=223, Percent_Identity=26.457399103139, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=216, Percent_Identity=26.8518518518519, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=27.6315789473684, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=27.5423728813559, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=27.9620853080569, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87082268, Length=240, Percent_Identity=25, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=26.9911504424779, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081834, Length=197, Percent_Identity=30.9644670050761, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1786872, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=28.1938325991189, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=25.9615384615385, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081782, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788644, Length=233, Percent_Identity=27.8969957081545, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786345, Length=236, Percent_Identity=30.0847457627119, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790544, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=26.8595041322314, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=235, Percent_Identity=28.936170212766, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=208, Percent_Identity=24.5192307692308, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=243, Percent_Identity=29.2181069958848, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=29.2792792792793, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=24.1071428571429, Blast_Score=84, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643674, Length=223, Percent_Identity=24.2152466367713, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573573, Length=220, Percent_Identity=24.0909090909091, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=26.2222222222222, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643672, Length=228, Percent_Identity=27.1929824561404, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015862
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 54165; Mature: 54033

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLTIRGARKAYGATVALRRGDLDLREGEVHVLIGSNGSGKSTLCKIVSGSVRPDAGEV
CCCCEEECCHHHCCEEEEEEECCCCEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCE
LIDGKTVSIDGPRAARALGLATFYQELSLAAHRTVAENISLPELPGKGGFFVDRERLNGI
EECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHH
AERYIRRFADVAGEGFSADARVEHLREDQRQLVEIMKTLATEAPILIFDEPTSSLDRSQV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
ERFFEVLRELKAQGRAIIFISHRMDEIFAIGDRVTVIRDGETVGTSLISETKPASIIHQM
HHHHHHHHHHHHCCCEEEEEECCCCHHHEECCEEEEEECCCHHHHHHHHCCCHHHHHHHH
VGESELAVTNGAPPAAAEVKTEAVLSVAGLSAKGFVNVSFEVRRGEILGFGGLHGQGQSA
HCCCCEEEECCCCCCHHHHHHHHHHHECCCCCCCEEEEEEEEECCEEEEECCCCCCCHHH
VLRSIFGVNPTDQGTIHIKGEKRTIRSPREAIRCGLAYISGDRGRDGVVHGRPILENVTP
HHHHHHCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHEEECCCCCCCCEECCHHHHCCCH
IHFLRNKLSLVRPGSLRERAAKPLSALKTRFAGYDQPVNALSGGNQQKIVIARWLIDRPD
HHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEEECCCCC
VLLLDDPTKGIDLQAKTDLFALIRSLAAEGMGIVLYSSEDAELLANADRILVFNSGSVSR
EEEEECCCCCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCEEEEECCCCCCE
ELTGADRTRYNLYHAAYEAA
ECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SNLTIRGARKAYGATVALRRGDLDLREGEVHVLIGSNGSGKSTLCKIVSGSVRPDAGEV
CCCEEECCHHHCCEEEEEEECCCCEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCE
LIDGKTVSIDGPRAARALGLATFYQELSLAAHRTVAENISLPELPGKGGFFVDRERLNGI
EECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHH
AERYIRRFADVAGEGFSADARVEHLREDQRQLVEIMKTLATEAPILIFDEPTSSLDRSQV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
ERFFEVLRELKAQGRAIIFISHRMDEIFAIGDRVTVIRDGETVGTSLISETKPASIIHQM
HHHHHHHHHHHHCCCEEEEEECCCCHHHEECCEEEEEECCCHHHHHHHHCCCHHHHHHHH
VGESELAVTNGAPPAAAEVKTEAVLSVAGLSAKGFVNVSFEVRRGEILGFGGLHGQGQSA
HCCCCEEEECCCCCCHHHHHHHHHHHECCCCCCCEEEEEEEEECCEEEEECCCCCCCHHH
VLRSIFGVNPTDQGTIHIKGEKRTIRSPREAIRCGLAYISGDRGRDGVVHGRPILENVTP
HHHHHHCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHEEECCCCCCCCEECCHHHHCCCH
IHFLRNKLSLVRPGSLRERAAKPLSALKTRFAGYDQPVNALSGGNQQKIVIARWLIDRPD
HHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEEECCCCC
VLLLDDPTKGIDLQAKTDLFALIRSLAAEGMGIVLYSSEDAELLANADRILVFNSGSVSR
EEEEECCCCCCCCEEHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCEEEEECCCCCCE
ELTGADRTRYNLYHAAYEAA
ECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA