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The map label for this gene is rbsC [H]

Identifier: 110632625

GI number: 110632625

Start: 304422

End: 305408

Strand: Reverse

Name: rbsC [H]

Synonym: Meso_0264

Alternate gene names: 110632625

Gene position: 305408-304422 (Counterclockwise)

Preceding gene: 110632626

Following gene: 110632624

Centisome position: 6.92

GC content: 63.32

Gene sequence:

>987_bases
ATGAGTGCGATCGAGACAGGAACTTCGCAGCGCCCGGGCTTAGCCGCGCTGGTGGAACGTTTCCCCTTCCTGCCGGCGCT
CGTCATCCTCTTGGCGCTCCTGGCGCTCAACGGATGGTTCCAGCCGAACAGCCTCGGCTTCCGCGCCATCACGGGGCTGA
TCAGCACTTATCTGGCGCTGATGATGCTTTCGGTCGCCCAGACCTATGTAGTCTATGCGGGCGACGTGGACCTCTCGGTG
GGAGCGATCCTCTCGCTTGTCAATTGCGTCATCATCGTGCTCATGGAGCGCTGGGGCGGCGGCGGAATTGCCGTGCTCAT
GGCCTGCGCCCTGGGCATTCTGACCGGGCTTGCCTGCGGTCTCCTTAACGGCTTCGTAGTTGCGGTGCTGCGGCTGCAGG
CCATCGTAGCCACCTTTGCGACCAGCATCTTCTTCACTGGAATAGCTCTCTATGTGCTTCCGGTGGCAGGCACGCCAGCG
CCCACGATCTACTGGCGCACCTATGGCGGCCGTTTCTTCGAAATCCCGTTCGTCTTCTATGTGGTGGCTGCGCTCGCAAT
CGTACTCGTGATGGCCACACGCGCCCGGTTAACCACGCAGATGCTTGCCGTGGGCGACGATGCCTTCAAGGCGTTTCAGG
GCGGTCTGCCGGTAACGGCGATCCGGTTGAAGGGCTATATGCTCTGCGGCGTTTTCTCGGCTCTTGCCGCCCTTTGCATC
ACCGGCGATACGGCGAGCGGCGATCCGCTGGTGGGAGGCGCGATGACGCTCTATTCGGTGGCCGCCGTGGTACTGGGCGG
TACGGCGCTTTCCGGCGGGCGTGGCTCGGTCGTGGGCTCCGTTCTGGGCGCGCTCATCATTGGTCTCATCAGCTCGCTCG
TCTTCTATGTCGGCACGCCCTCGCAGTGGCAGAACCTCGTGCAGGGCCTCGCGATTCTCCTCGCGCTGATGCTCGGCGTC
ATGGTCACCCGGAGGGTCCAGCGATGA

Upstream 100 bases:

>100_bases
ACCGCATCCTCGTCTTCAACAGCGGCTCGGTGAGCCGGGAGCTTACCGGCGCAGACCGCACCCGCTACAACCTCTATCAC
GCCGCATACGAGGCCGCCTG

Downstream 100 bases:

>100_bases
GCGTGGAGGCCGCAGGCAAGGCGGAAGCCTCGCGCTTCTCCCTTACGAACCTGATCAGGCAGCCGCTCCTGGTGGCGCTG
GTCCTAATCGTGCTCCTGCT

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSAIETGTSQRPGLAALVERFPFLPALVILLALLALNGWFQPNSLGFRAITGLISTYLALMMLSVAQTYVVYAGDVDLSV
GAILSLVNCVIIVLMERWGGGGIAVLMACALGILTGLACGLLNGFVVAVLRLQAIVATFATSIFFTGIALYVLPVAGTPA
PTIYWRTYGGRFFEIPFVFYVVAALAIVLVMATRARLTTQMLAVGDDAFKAFQGGLPVTAIRLKGYMLCGVFSALAALCI
TGDTASGDPLVGGAMTLYSVAAVVLGGTALSGGRGSVVGSVLGALIIGLISSLVFYVGTPSQWQNLVQGLAILLALMLGV
MVTRRVQR

Sequences:

>Translated_328_residues
MSAIETGTSQRPGLAALVERFPFLPALVILLALLALNGWFQPNSLGFRAITGLISTYLALMMLSVAQTYVVYAGDVDLSV
GAILSLVNCVIIVLMERWGGGGIAVLMACALGILTGLACGLLNGFVVAVLRLQAIVATFATSIFFTGIALYVLPVAGTPA
PTIYWRTYGGRFFEIPFVFYVVAALAIVLVMATRARLTTQMLAVGDDAFKAFQGGLPVTAIRLKGYMLCGVFSALAALCI
TGDTASGDPLVGGAMTLYSVAAVVLGGTALSGGRGSVVGSVLGALIIGLISSLVFYVGTPSQWQNLVQGLAILLALMLGV
MVTRRVQR
>Mature_327_residues
SAIETGTSQRPGLAALVERFPFLPALVILLALLALNGWFQPNSLGFRAITGLISTYLALMMLSVAQTYVVYAGDVDLSVG
AILSLVNCVIIVLMERWGGGGIAVLMACALGILTGLACGLLNGFVVAVLRLQAIVATFATSIFFTGIALYVLPVAGTPAP
TIYWRTYGGRFFEIPFVFYVVAALAIVLVMATRARLTTQMLAVGDDAFKAFQGGLPVTAIRLKGYMLCGVFSALAALCIT
GDTASGDPLVGGAMTLYSVAAVVLGGTALSGGRGSVVGSVLGALIIGLISSLVFYVGTPSQWQNLVQGLAILLALMLGVM
VTRRVQR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=263, Percent_Identity=28.8973384030418, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790191, Length=314, Percent_Identity=28.9808917197452, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788896, Length=267, Percent_Identity=28.8389513108614, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790524, Length=323, Percent_Identity=28.4829721362229, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693152, Length=338, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=32.8467153284672, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787793, Length=305, Percent_Identity=28.1967213114754, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34108; Mature: 33977

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIETGTSQRPGLAALVERFPFLPALVILLALLALNGWFQPNSLGFRAITGLISTYLAL
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
MMLSVAQTYVVYAGDVDLSVGAILSLVNCVIIVLMERWGGGGIAVLMACALGILTGLACG
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLNGFVVAVLRLQAIVATFATSIFFTGIALYVLPVAGTPAPTIYWRTYGGRFFEIPFVFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHHHH
VVAALAIVLVMATRARLTTQMLAVGDDAFKAFQGGLPVTAIRLKGYMLCGVFSALAALCI
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
TGDTASGDPLVGGAMTLYSVAAVVLGGTALSGGRGSVVGSVLGALIIGLISSLVFYVGTP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SQWQNLVQGLAILLALMLGVMVTRRVQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAIETGTSQRPGLAALVERFPFLPALVILLALLALNGWFQPNSLGFRAITGLISTYLAL
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
MMLSVAQTYVVYAGDVDLSVGAILSLVNCVIIVLMERWGGGGIAVLMACALGILTGLACG
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLNGFVVAVLRLQAIVATFATSIFFTGIALYVLPVAGTPAPTIYWRTYGGRFFEIPFVFY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHHHH
VVAALAIVLVMATRARLTTQMLAVGDDAFKAFQGGLPVTAIRLKGYMLCGVFSALAALCI
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
TGDTASGDPLVGGAMTLYSVAAVVLGGTALSGGRGSVVGSVLGALIIGLISSLVFYVGTP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SQWQNLVQGLAILLALMLGVMVTRRVQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]