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The map label for this gene is rbsB [H]

Identifier: 110632627

GI number: 110632627

Start: 306975

End: 308000

Strand: Reverse

Name: rbsB [H]

Synonym: Meso_0266

Alternate gene names: 110632627

Gene position: 308000-306975 (Counterclockwise)

Preceding gene: 110632628

Following gene: 110632626

Centisome position: 6.98

GC content: 61.89

Gene sequence:

>1026_bases
ATGATCAGAACGTCCGGAACTCTCGTGGCTGCGGCCGCAGCTTTGATGCTTACTGCCGTTGGTTCCAACGCGCAGGATTT
CACCATCGGCCTGTCTAACGGCTGGGTGGGAAGCGAATGGCGCACGCAGATGATCGAGGAAGCCCAGGAAGCCGCTCAAA
AGTGGGCCGACAAGGGCGTGAATGTCGAAGTGGTGGTGCAGAGCGCCAATGTTGACGTGCCCGGCCAGATCGCCCATGTG
CGCAACTTCATCAATCAGGGCGTCGACGCCATCATCATCAATCCAAACAGCCCGACCGCCTTCGACCCGGTCTTCGCGCA
GGCCAAGGAAGCGGGAATCCTCGTGATCTCGACCGATGCCGAGGTTTCTTCGCCGGATGCTATCTATGTGGGCATCGACC
AGACCGCCTGGGGCGCGGCCGGCGCCAAGTGGCTGGCTGAGACACTGGGCGGCAAGGGCGAGGTGGTCGCGATCAACGGC
GTGGCCGGCCATCCGGCCAACGAGATGCGCGTCGCGGGCTACCGCAGCGTGTTCAAGGATTACCCGGACATCAAGGTGGT
GAACGAGGTCAACGCCAACTGGGACCAGGCGCAGGGTCAGCAGGCCATGCAGAACATCCTCGCCACCTATCCCAACATCA
ACGGCGTGTGGGTGCAGGACGGCATGGCTGCAGGCGCATGGCGCTCTATCATGGATGCCGGCAAGACCGACCAGATCGCC
GCCACGGGGGAGATCCGCAAGGACTTCCTCGACCTTTGGGTGGAGAACAACCTGAACTCCGGCGCCTCGGTGAACCCTCC
CGGCGTGATGGCCAGCGCGCTCAATGTGGCCGTGCTCATGCTGCAGGGCAAAGAGCTCAAGACGCCGGCGACCGCCGGCC
AATACGGCAACGCCATGTATCTGCCGATCCCCTTCATCGACAAGGACAACGTGAAGGAAATCCACGCGCAGCTGGAAGGC
AAGCCGGGCCACTATTCTTACACGAGCTCGCTTTCCATCGAAGAGGCCGAAGCTCTCTTTCAGTAA

Upstream 100 bases:

>100_bases
CGATTAATTCACATCGAAGCCGACGCTCTGGATCAGAGCCGCGACATCTGATAGACATTCTCAAATTGAAATCGATTTCA
TCGGTTCAGTGGAGGAGAGA

Downstream 100 bases:

>100_bases
GCTCCTCCGCAGCGGGAGCGTGCCTGCCTTTGGGCGGGCGCGCTCTTGCGCCCAAGGTGTTGCCATGTCCAATCTGACCA
TCCGGGGAGCGCGAAAGGCT

Product: putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIRTSGTLVAAAAALMLTAVGSNAQDFTIGLSNGWVGSEWRTQMIEEAQEAAQKWADKGVNVEVVVQSANVDVPGQIAHV
RNFINQGVDAIIINPNSPTAFDPVFAQAKEAGILVISTDAEVSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGEVVAING
VAGHPANEMRVAGYRSVFKDYPDIKVVNEVNANWDQAQGQQAMQNILATYPNINGVWVQDGMAAGAWRSIMDAGKTDQIA
ATGEIRKDFLDLWVENNLNSGASVNPPGVMASALNVAVLMLQGKELKTPATAGQYGNAMYLPIPFIDKDNVKEIHAQLEG
KPGHYSYTSSLSIEEAEALFQ

Sequences:

>Translated_341_residues
MIRTSGTLVAAAAALMLTAVGSNAQDFTIGLSNGWVGSEWRTQMIEEAQEAAQKWADKGVNVEVVVQSANVDVPGQIAHV
RNFINQGVDAIIINPNSPTAFDPVFAQAKEAGILVISTDAEVSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGEVVAING
VAGHPANEMRVAGYRSVFKDYPDIKVVNEVNANWDQAQGQQAMQNILATYPNINGVWVQDGMAAGAWRSIMDAGKTDQIA
ATGEIRKDFLDLWVENNLNSGASVNPPGVMASALNVAVLMLQGKELKTPATAGQYGNAMYLPIPFIDKDNVKEIHAQLEG
KPGHYSYTSSLSIEEAEALFQ
>Mature_341_residues
MIRTSGTLVAAAAALMLTAVGSNAQDFTIGLSNGWVGSEWRTQMIEEAQEAAQKWADKGVNVEVVVQSANVDVPGQIAHV
RNFINQGVDAIIINPNSPTAFDPVFAQAKEAGILVISTDAEVSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGEVVAING
VAGHPANEMRVAGYRSVFKDYPDIKVVNEVNANWDQAQGQQAMQNILATYPNINGVWVQDGMAAGAWRSIMDAGKTDQIA
ATGEIRKDFLDLWVENNLNSGASVNPPGVMASALNVAVLMLQGKELKTPATAGQYGNAMYLPIPFIDKDNVKEIHAQLEG
KPGHYSYTSSLSIEEAEALFQ

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=239, Percent_Identity=28.8702928870293, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790674, Length=219, Percent_Identity=30.1369863013699, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790526, Length=290, Percent_Identity=26.551724137931, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36257; Mature: 36257

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTSGTLVAAAAALMLTAVGSNAQDFTIGLSNGWVGSEWRTQMIEEAQEAAQKWADKGV
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
NVEVVVQSANVDVPGQIAHVRNFINQGVDAIIINPNSPTAFDPVFAQAKEAGILVISTDA
CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEEECCC
EVSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGEVVAINGVAGHPANEMRVAGYRSVFKD
CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEHHHHHHHHHC
YPDIKVVNEVNANWDQAQGQQAMQNILATYPNINGVWVQDGMAAGAWRSIMDAGKTDQIA
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEE
ATGEIRKDFLDLWVENNLNSGASVNPPGVMASALNVAVLMLQGKELKTPATAGQYGNAMY
ECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCCCCCCEEE
LPIPFIDKDNVKEIHAQLEGKPGHYSYTSSLSIEEAEALFQ
EEECCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHCC
>Mature Secondary Structure
MIRTSGTLVAAAAALMLTAVGSNAQDFTIGLSNGWVGSEWRTQMIEEAQEAAQKWADKGV
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
NVEVVVQSANVDVPGQIAHVRNFINQGVDAIIINPNSPTAFDPVFAQAKEAGILVISTDA
CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEEECCC
EVSSPDAIYVGIDQTAWGAAGAKWLAETLGGKGEVVAINGVAGHPANEMRVAGYRSVFKD
CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEHHHHHHHHHC
YPDIKVVNEVNANWDQAQGQQAMQNILATYPNINGVWVQDGMAAGAWRSIMDAGKTDQIA
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEE
ATGEIRKDFLDLWVENNLNSGASVNPPGVMASALNVAVLMLQGKELKTPATAGQYGNAMY
ECHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCCCCCCEEE
LPIPFIDKDNVKEIHAQLEGKPGHYSYTSSLSIEEAEALFQ
EEECCCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]