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The map label for this gene is rbpE [H]

Identifier: 109947722

GI number: 109947722

Start: 1032834

End: 1033082

Strand: Reverse

Name: rbpE [H]

Synonym: Hac_1195

Alternate gene names: 109947722

Gene position: 1033082-1032834 (Counterclockwise)

Preceding gene: 109947723

Following gene: 109947719

Centisome position: 66.48

GC content: 37.75

Gene sequence:

>249_bases
TTGAGAAACATTTATGTAGGGAATTTGGTTTATAGTGCTACCAGCGAGGAAGTCAAGGAGCTTTTCAGTCAATTTGGCAA
GGTGTTTAATGTCAAGCTTATTTATGACAGAGAAACGAAAAAACCCAAAGGGTTTGGTTTTGTGGAAATGCAAGAAGAGG
GCATCAATGAAGCGATCGCTAAATTGAACAATACGGATTTTATGGGGAGAATCATCAGAGTAACCGAGGCTAATCCTAAA
AAATCTTAA

Upstream 100 bases:

>100_bases
TTTCGTGTCGGATGTGTTGGGTTTTTAAGAGTGTTACTTTTTGATAACTTTTTCATATTCTTGTAAGTAGTTTTTATTTT
TTCTAGCGGAGAATTTCACT

Downstream 100 bases:

>100_bases
TCTCATATGGCATTTAGGAAATGATAAGATCATTTTCTGATGCGTTTTGATCTTTTTGCGTTTTTGGTTTTAAATATACC
TTTCATTGTGTGAAGTTTAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MRNIYVGNLVYSATSEEVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGINEAIAKLNNTDFMGRIIRVTEANPK
KS

Sequences:

>Translated_82_residues
MRNIYVGNLVYSATSEEVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGINEAIAKLNNTDFMGRIIRVTEANPK
KS
>Mature_82_residues
MRNIYVGNLVYSATSEEVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGINEAIAKLNNTDFMGRIIRVTEANPK
KS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=83, Percent_Identity=45.7831325301205, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI4557493, Length=83, Percent_Identity=45.7831325301205, Blast_Score=84, Evalue=3e-17,
Organism=Homo sapiens, GI4505255, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=48.6842105263158, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=41.5584415584416, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=75, Percent_Identity=44, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322191, Length=74, Percent_Identity=33.7837837837838, Blast_Score=60, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17137710, Length=83, Percent_Identity=46.9879518072289, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9409; Mature: 9409

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIYVGNLVYSATSEEVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGINEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
KLNNTDFMGRIIRVTEANPKKS
HCCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MRNIYVGNLVYSATSEEVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGINEAIA
CCCEEECCEEECCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEECCCCHHHHHH
KLNNTDFMGRIIRVTEANPKKS
HCCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]