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The map label for this gene is omp12 fragment 5

Identifier: 109947488

GI number: 109947488

Start: 824254

End: 824508

Strand: Reverse

Name: omp12 fragment 5

Synonym: Hac_0942

Alternate gene names: NA

Gene position: 824508-824254 (Counterclockwise)

Preceding gene: 109947489

Following gene: 109947487

Centisome position: 53.06

GC content: 37.65

Gene sequence:

>255_bases
GTGAATCTAACGACTTTTAACAATACTTATAGTGCTAAAGTGCATAATTCCAATTTCCAGTTCTTAATCAATTTAGGTTT
AAGGACTAACCTCGCTACCGCCAAAAAGAGATATGATGCGCATTCTGCACAACATGGCATGGAATTAGGCGTGAAGATCC
CTACCATCAACACGAATTATTATTCTTTTGTGGGCACTCAATTGCAATACCGCAGGCTTTATAGCGTGTATCTCAATTAT
GTGTTTGCTTACTAA

Upstream 100 bases:

>100_bases
TGAATTTCATCAACGATAAGGAGCTTAAAAAAGTAAGATTCCTTTTGGACTTTTTGGCGGTATCGCATTCGCTGGCACGA
CATGGCTTAATTCTCAGCAT

Downstream 100 bases:

>100_bases
ACCTTTCTTTTTTCTTTAAACCCTCTTTTTAACTTCCTCTTTTGTGGGGTATTGCGTTTAAAAATGCTTTTAGGGTTTTT
AAAATTTTATTACCACCAAC

Product: outer membrane protein 12 fragment 5

Products: NA

Alternate protein names: Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Function; Adhesin; Outer Membrane Protein HopG

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MNLTTFNNTYSAKVHNSNFQFLINLGLRTNLATAKKRYDAHSAQHGMELGVKIPTINTNYYSFVGTQLQYRRLYSVYLNY
VFAY

Sequences:

>Translated_84_residues
MNLTTFNNTYSAKVHNSNFQFLINLGLRTNLATAKKRYDAHSAQHGMELGVKIPTINTNYYSFVGTQLQYRRLYSVYLNY
VFAY
>Mature_84_residues
MNLTTFNNTYSAKVHNSNFQFLINLGLRTNLATAKKRYDAHSAQHGMELGVKIPTINTNYYSFVGTQLQYRRLYSVYLNY
VFAY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9781; Mature: 9781

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTTFNNTYSAKVHNSNFQFLINLGLRTNLATAKKRYDAHSAQHGMELGVKIPTINTNY
CCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEECCEECCCE
YSFVGTQLQYRRLYSVYLNYVFAY
EEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLTTFNNTYSAKVHNSNFQFLINLGLRTNLATAKKRYDAHSAQHGMELGVKIPTINTNY
CCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEECCEECCCE
YSFVGTQLQYRRLYSVYLNYVFAY
EEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA