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The map label for this gene is ycjO [C]

Identifier: 108812392

GI number: 108812392

Start: 2519273

End: 2520133

Strand: Reverse

Name: ycjO [C]

Synonym: YPN_2231

Alternate gene names: 108812392

Gene position: 2520133-2519273 (Counterclockwise)

Preceding gene: 108812393

Following gene: 108812391

Centisome position: 55.58

GC content: 52.03

Gene sequence:

>861_bases
ATGAATGCAAAACTCACGCAGCAGGCGTTTACTCTGCCGTTACTGGTTGTGTTGCTACTGGTTTCGTTCTACACGCTGGG
TTACGCCATCTATCTGTCAGTCCACGACATCGATCTGATGTCGCCTCCGCCATTTGATTTCATCGGCATGGCGAACTTTA
TTGAGGTGTTGCAAGAGCCACGGATGTGGTCATCCCTTTGGAACACACTGGTTTATGTGGCGGGTTCAACGGTAGCAGAG
TTGGTGCTTGGCAGTGCGATTGCGTTGTTTATAAGCCGTGACTTTTTTGGCCGTAAGCTGGTACGTGCGCTGTTACTGCT
GCCAATGATTGTCACACCGATTGTTGCTGGGCTTATCTGGCGTATTTTTTACGATCCAAATGCCGGTTTATTTAACTGGC
TGGCCGGCCTGATCGGTATTCCGCCGATTGACTGGTTAGGTAACCCCAGCACCGCGATGGCTTCGTTGATCCTGGCCGAT
ATCTGGCAGTGGACGCCGTTTATCATTTTACTGGTTTCAGCCGGTCTGGATGCGTTACCCAGTGAACCGCTAGAGGCGGC
CGAGCTGGATGGCGCGCGCGGTTGGCGGCTACTGGCCTTTATTAAGCTACCAATGATGAAGCCCATCATTCTGATGGCGT
TGTTCCTGCGGATGATCGACGCCTTCAAATCCTTCGACCTGATCTACGTGATGACCCGAGGTGGCCCGGCGTTGGCAACG
GAAACCACCAACATGTACGCCTATCTTACCGGGTTTCAGGATTTCCGTATCAGCGCGGCGGTGGTGATTGCCATCATCAA
TACGCTACTGGTGATCGCGGTACTGTCATTTGCCAGTAAAAAGGTGATGAAAGATGAGTGA

Upstream 100 bases:

>100_bases
CAACACCCGTAATGATAAAGCGTTGTCCCGTTAATCGCTTTCCGTCAGTGCAGTTGCGCACTGACGGAAATGAAATTCTT
ACGCAGGTTTAGGTAAAACT

Downstream 100 bases:

>100_bases
TTCTTTGAAGTTTATCTGCCAGAGAACGGGCTTCTATCTCCTGTTGGTGGTGATCTTGGTGTTTTTTCTGCTGCCGATTT
ACTGGTTGGTGACGATGTCA

Product: binding-protein-dependent transport system, inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNAKLTQQAFTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAE
LVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILAD
IWQWTPFIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALAT
ETTNMYAYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE

Sequences:

>Translated_286_residues
MNAKLTQQAFTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAE
LVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILAD
IWQWTPFIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALAT
ETTNMYAYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
>Mature_286_residues
MNAKLTQQAFTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEPRMWSSLWNTLVYVAGSTVAE
LVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIWRIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILAD
IWQWTPFIILLVSAGLDALPSEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALAT
ETTNMYAYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=240, Percent_Identity=28.75, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789861, Length=274, Percent_Identity=28.1021897810219, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790465, Length=271, Percent_Identity=27.3062730627306, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082099, Length=233, Percent_Identity=26.6094420600858, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31695; Mature: 31695

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKLTQQAFTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCC
RMWSSLWNTLVYVAGSTVAELVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTPFIILLVSAGLDALP
HHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALAT
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEE
ETTNMYAYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
ECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAKLTQQAFTLPLLVVLLLVSFYTLGYAIYLSVHDIDLMSPPPFDFIGMANFIEVLQEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCC
RMWSSLWNTLVYVAGSTVAELVLGSAIALFISRDFFGRKLVRALLLLPMIVTPIVAGLIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIFYDPNAGLFNWLAGLIGIPPIDWLGNPSTAMASLILADIWQWTPFIILLVSAGLDALP
HHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEPLEAAELDGARGWRLLAFIKLPMMKPIILMALFLRMIDAFKSFDLIYVMTRGGPALAT
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEE
ETTNMYAYLTGFQDFRISAAVVIAIINTLLVIAVLSFASKKVMKDE
ECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]