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The map label for this gene is ycjP [C]

Identifier: 108812391

GI number: 108812391

Start: 2518453

End: 2519280

Strand: Reverse

Name: ycjP [C]

Synonym: YPN_2230

Alternate gene names: 108812391

Gene position: 2519280-2518453 (Counterclockwise)

Preceding gene: 108812392

Following gene: 108812390

Centisome position: 55.56

GC content: 51.21

Gene sequence:

>828_bases
ATGAGTGATTCTTTGAAGTTTATCTGCCAGAGAACGGGCTTCTATCTCCTGTTGGTGGTGATCTTGGTGTTTTTTCTGCT
GCCGATTTACTGGTTGGTGACGATGTCATTTAAAACCTATATCGACGCGTTTGCCATGCCACCCAAGCTGTGGTTTACGC
CCATCTTGGATAATTACCGGCAGGTGCTGGGCAACGGTGACTTTATTCGTGCATTTGGTAATAGCCTGCTGATATCGCTG
GTCTCGACATTTCTGTGTTTGATTCTCGGTGCGTTGTTCGCATACGGCCTGGTGTTCTTCATCGAACGGAAAGGGCGGGC
GAAGCAGTTCATTATGAGCCTGCGTTATGCGCCAGTGATCATGTTGGTGATCCCGGTTTACTACCTAATCACCAAGCTGG
GAATGACGGACAACTATCTGGTGCTGATCCTGGTGTATACCGTGGCAAACGTGCCTTTCACCATTCTGATGGTCACCACT
TTTTTTGAAGATATTCCACCGGAAATCCGGGAGGCTGCTCGCGTTGATGGGGCCAGTGAGTGGCGCGTGTTCTTAAGCGT
AATGTTACCACTGGCCCGCACCGGGCTGGCTGCGTCAGGCGTGCTGACACTGTTCTTTATCTGGAACGAATTCCAGATTG
TTCTAACGCTCTCTGGTGATTCCACACAAACGTTGCCAGTGGCGATCACCTCATTCCTGACCTTTCAGGGGACGGAGTGG
GGCCCACTGACGGCAGCAGGAACCTTGGTGATGTTGCCGATGTTGGTTCTCGGCCTACTGGTACAAAAACATCTGGTGCG
CGGTTTAACCATGGGCGGCGTTAAGTAG

Upstream 100 bases:

>100_bases
TTTCAGGATTTCCGTATCAGCGCGGCGGTGGTGATTGCCATCATCAATACGCTACTGGTGATCGCGGTACTGTCATTTGC
CAGTAAAAAGGTGATGAAAG

Downstream 100 bases:

>100_bases
CTCAGAAGGAAGGAGGAGTAAATTATGTCAGGTATACGTCTGAGCAATGTGTTTAAACGCTTTCATGACACACAAGTTAT
TAATCAGGTCGATCTTGAAA

Product: binding-protein-dependent transport system, inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSDSLKFICQRTGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNYRQVLGNGDFIRAFGNSLLISL
VSTFLCLILGALFAYGLVFFIERKGRAKQFIMSLRYAPVIMLVIPVYYLITKLGMTDNYLVLILVYTVANVPFTILMVTT
FFEDIPPEIREAARVDGASEWRVFLSVMLPLARTGLAASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEW
GPLTAAGTLVMLPMLVLGLLVQKHLVRGLTMGGVK

Sequences:

>Translated_275_residues
MSDSLKFICQRTGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNYRQVLGNGDFIRAFGNSLLISL
VSTFLCLILGALFAYGLVFFIERKGRAKQFIMSLRYAPVIMLVIPVYYLITKLGMTDNYLVLILVYTVANVPFTILMVTT
FFEDIPPEIREAARVDGASEWRVFLSVMLPLARTGLAASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEW
GPLTAAGTLVMLPMLVLGLLVQKHLVRGLTMGGVK
>Mature_274_residues
SDSLKFICQRTGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNYRQVLGNGDFIRAFGNSLLISLV
STFLCLILGALFAYGLVFFIERKGRAKQFIMSLRYAPVIMLVIPVYYLITKLGMTDNYLVLILVYTVANVPFTILMVTTF
FEDIPPEIREAARVDGASEWRVFLSVMLPLARTGLAASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEWG
PLTAAGTLVMLPMLVLGLLVQKHLVRGLTMGGVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=280, Percent_Identity=31.4285714285714, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789860, Length=227, Percent_Identity=30.8370044052863, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790464, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30860; Mature: 30728

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDSLKFICQRTGFYLLLVVILVFFLLPIYWLVTMSFKTYIDAFAMPPKLWFTPILDNYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QVLGNGDFIRAFGNSLLISLVSTFLCLILGALFAYGLVFFIERKGRAKQFIMSLRYAPVI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MLVIPVYYLITKLGMTDNYLVLILVYTVANVPFTILMVTTFFEDIPPEIREAARVDGASE
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHH
WRVFLSVMLPLARTGLAASGVLTLFFIWNEFQIVLTLSGDSTQTLPVAITSFLTFQGTEW
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
GPLTAAGTLVMLPMLVLGLLVQKHLVRGLTMGGVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]