Definition | Yersinia pestis Nepal516, complete genome. |
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Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is malE [C]
Identifier: 108812393
GI number: 108812393
Start: 2520200
End: 2521468
Strand: Reverse
Name: malE [C]
Synonym: YPN_2232
Alternate gene names: 108812393
Gene position: 2521468-2520200 (Counterclockwise)
Preceding gene: 108812394
Following gene: 108812392
Centisome position: 55.61
GC content: 51.93
Gene sequence:
>1269_bases ATGAGCATAAAAAAAATAGGTATCGCAGGTATTATCGGCACGTTGCTGATGGCGGGTAACGCCAGCGCACAGGAAACCCT CCGTGTACTGCTCGAAGGGCACAGCACCAGCGACTCGATAAAAGCACTGTTACCCGAATTCGAAAAGCAGACCGGTATTA AGGTTCAGGCAGAGATAGTACCTTACAGCGATCTGACCTCTAAAGCCCTGCTGGCCTTCTCCTCGCACAGTGGACGTTAC GACGTGGTTATGGATGACTGGGTGCATGCGGTAGGTTACGCCTCTGCTGGTTATATCACACCTGTAGATCAGTGGATGGA GAGTGATACCGCCTTCTACGATGGTGCGGATTTCGTCAAAAGCTATGCTGATACGCTGCGTTATAAAGACGGTTATTACG GGCTGCCAGTCTATGGTGAAAGTACCTTCCTGATGTACCGCAAAGACCTGTTTGAACAGTACGGTATCGCCGTGCCGAAA ACCTTTGATGAGCTGACCGCTGCGGCAAAAACCATCAAAGAGAAGACCGAAGGTAAGGTGGCGGGTATTACGCTCCGTGG AGCTCAGGGGATCCAGAACACCTTTGCATGGGCGTCATTCCTCTGGGGTTACGGCGGCCAGTGGATTGACGACAACGGAA AATCTGCAATTACTTCGCCACAGGCGGTAGAAGCCACCAAGTCATTCGTCAATATCCTGAAAAACTACGGGCCGATCGGC GCGGCTAACTTCGGCTGGCAGGAAAACCGCTTGGTATTCCAGCAGGGCAAAGCGGCAATGACTATCGATTCGACAGTGAA CGGGGGCTTCAACGAAGACCCGAAAGAGTCCACGGTCGTCGGTAAAGTGGGCTATGCCCCGGTACCGGTACAGCCAGGCG ATCATCCGGGTAACAGCGGCGCACTTCAGGTGCATGGCTTGTATATCTCCAGCGACAGTAAGAAGCAGGATGCTGCCTGG AAATTTATCAGTTGGGCAACGGACAAACAGACGCAGATGAAGTCGGTCGAACTGAATCCTAACGCCGGTGTGAGTTCACT CAGTGCCATCAACAGTGATGCCTTCACCAAGCGTTACGGGGCCTTTAAGGATGGTATGCTCGCAGCATTGCAAAACGGCA ATGCGAAATACCTCCCAACCATTCCGCAGTCTACACAGATTATCAACATAACCGGTATTGCTCTATCCGAGGCACTGGCA GGTACTCAGACAGTAGAAAATGCCCTTCAGCAAGCCAACACCCGTAATGATAAAGCGTTGTCCCGTTAA
Upstream 100 bases:
>100_bases GCAATGAGGCACTGCGTATTACCGTTGCCATTATGGACTCTGCCCGTACCGGCGAAATTGTCCGGGTCTGACATTCTGAC TGAATAAACCAGGTGATGAG
Downstream 100 bases:
>100_bases TCGCTTTCCGTCAGTGCAGTTGCGCACTGACGGAAATGAAATTCTTACGCAGGTTTAGGTAAAACTATGAATGCAAAACT CACGCAGCAGGCGTTTACTC
Product: exported solute-binding protein
Products: ADP; phosphate; maltose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MSIKKIGIAGIIGTLLMAGNASAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIVPYSDLTSKALLAFSSHSGRY DVVMDDWVHAVGYASAGYITPVDQWMESDTAFYDGADFVKSYADTLRYKDGYYGLPVYGESTFLMYRKDLFEQYGIAVPK TFDELTAAAKTIKEKTEGKVAGITLRGAQGIQNTFAWASFLWGYGGQWIDDNGKSAITSPQAVEATKSFVNILKNYGPIG AANFGWQENRLVFQQGKAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSGALQVHGLYISSDSKKQDAAW KFISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYGAFKDGMLAALQNGNAKYLPTIPQSTQIINITGIALSEALA GTQTVENALQQANTRNDKALSR
Sequences:
>Translated_422_residues MSIKKIGIAGIIGTLLMAGNASAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIVPYSDLTSKALLAFSSHSGRY DVVMDDWVHAVGYASAGYITPVDQWMESDTAFYDGADFVKSYADTLRYKDGYYGLPVYGESTFLMYRKDLFEQYGIAVPK TFDELTAAAKTIKEKTEGKVAGITLRGAQGIQNTFAWASFLWGYGGQWIDDNGKSAITSPQAVEATKSFVNILKNYGPIG AANFGWQENRLVFQQGKAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSGALQVHGLYISSDSKKQDAAW KFISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYGAFKDGMLAALQNGNAKYLPTIPQSTQIINITGIALSEALA GTQTVENALQQANTRNDKALSR >Mature_421_residues SIKKIGIAGIIGTLLMAGNASAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIVPYSDLTSKALLAFSSHSGRYD VVMDDWVHAVGYASAGYITPVDQWMESDTAFYDGADFVKSYADTLRYKDGYYGLPVYGESTFLMYRKDLFEQYGIAVPKT FDELTAAAKTIKEKTEGKVAGITLRGAQGIQNTFAWASFLWGYGGQWIDDNGKSAITSPQAVEATKSFVNILKNYGPIGA ANFGWQENRLVFQQGKAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSGALQVHGLYISSDSKKQDAAWK FISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYGAFKDGMLAALQNGNAKYLPTIPQSTQIINITGIALSEALAG TQTVENALQQANTRNDKALSR
Specific function: Probably part of an ABC transporter complex [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006061 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 45560; Mature: 45428
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKKIGIAGIIGTLLMAGNASAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIV CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE PYSDLTSKALLAFSSHSGRYDVVMDDWVHAVGYASAGYITPVDQWMESDTAFYDGADFVK CCCCHHHHHHEEEECCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEECCHHHHH SYADTLRYKDGYYGLPVYGESTFLMYRKDLFEQYGIAVPKTFDELTAAAKTIKEKTEGKV HHHHHHHCCCCEECCEEECCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCE AGITLRGAQGIQNTFAWASFLWGYGGQWIDDNGKSAITSPQAVEATKSFVNILKNYGPIG EEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC AANFGWQENRLVFQQGKAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSG CCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC ALQVHGLYISSDSKKQDAAWKFISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYG EEEEEEEEEECCCCCCHHHHHEEEECCCCCHHHEEEEECCCCCHHHHHHHCCHHHHHHHC AFKDGMLAALQNGNAKYLPTIPQSTQIINITGIALSEALAGTQTVENALQQANTRNDKAL CCCCCHHHEEECCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHC SR CC >Mature Secondary Structure SIKKIGIAGIIGTLLMAGNASAQETLRVLLEGHSTSDSIKALLPEFEKQTGIKVQAEIV CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE PYSDLTSKALLAFSSHSGRYDVVMDDWVHAVGYASAGYITPVDQWMESDTAFYDGADFVK CCCCHHHHHHEEEECCCCCEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEECCHHHHH SYADTLRYKDGYYGLPVYGESTFLMYRKDLFEQYGIAVPKTFDELTAAAKTIKEKTEGKV HHHHHHHCCCCEECCEEECCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCE AGITLRGAQGIQNTFAWASFLWGYGGQWIDDNGKSAITSPQAVEATKSFVNILKNYGPIG EEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC AANFGWQENRLVFQQGKAAMTIDSTVNGGFNEDPKESTVVGKVGYAPVPVQPGDHPGNSG CCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC ALQVHGLYISSDSKKQDAAWKFISWATDKQTQMKSVELNPNAGVSSLSAINSDAFTKRYG EEEEEEEEEECCCCCCHHHHHEEEECCCCCHHHEEEEECCCCCHHHHHHHCCHHHHHHHC AFKDGMLAALQNGNAKYLPTIPQSTQIINITGIALSEALAGTQTVENALQQANTRNDKAL CCCCCHHHEEECCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHC SR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; maltose [Periplasm]; H2O [C]
Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA